LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal2g0881	ATGATTTTTGTGTGTGAGAAATGGGAATTTTCTTTTCAGTATGGAAGTTTTGCTGGCACAAAAGAAAGCATGGGAAAAAAAAGGAAAACTTGTGTCAAGATGCCCGGAAAACCAGATACCGATGATTGGCGAGCAGAGCGTGGCGAGCAGATTCAGTTTCAATCTTCCATTTTCTCTCAGTCTCAGCCTTGGTGGCAAGGAGTGAGGGGAAATGCGTCAAAATCTTCTTCAGCAGATCAGCAAAATGGTTCAGTCATGAATGGTGTAGCTCAATCAGAGACAAATGAGGGGCTGCTTCATGGAGTTGATTTCAATAAACAGATGCAGCCTGGAGCTGATAAATCAGGTGGGGATGTTGCCAAAGAGCACCAAAGCATCAAACATGCTCTGTCTTCAACTCCATATACCGTGGGAAAACACCTCGTTCCGAATTCCCAGATGGAACTTGTTGGTCATTCAGTTGTTTTAACATCTTATCCGTATTCAGATGCACAGTATGGTGGACTCTTGACTAACTTTGGGCAACAAGCTATGATAAACCCTCAATTGTATGGAATACATCATACTAGAATGCCTTTGCCACTTGAAATGGAAGAGGAGCCTGTTTATGTTAATGCAAAGCAGTATCATGGTATTTTGAGGCGGAGGCAGTCACGTGCTAAGGCTGAGCTTGAGAAGAAAGTGATTAAAGCTAGAAAGACTATGGAAGATTATTTATCATGCTTTATATGCTGGACTGCCGATATTCGTTTCGTTGTCAAGATCTCTTTGGCTATTTTGCTTTCTATTAGGACTTGTGTTTTCTTTTGCCTTGAAATCAATGCTCAAATTTGCTGGGGCCTGGAAGGGAACCCCGAAGTTACTTTTCCGTATCTTCATGAATCTCGTCACTTACATGCTCTGAGGAGGGCAAGGGGTAATGGAGGTCGCTTTCTCAATACAAAGAAGCTTGAAGGTAACAGTTCCGATGGCACTATAGGCAACAATAATGGTGCAAACCCCTTAACATTATCTGGCAGCTCATCTGCAGCTCATCATTTGGTTACCAACAACGGAATTCTCGTCTCATCAAATGATCAGTATGGTGCATCACAGTCCATGGTTGAGGACATCCATCAGGTGCAGAGTTTCACCATTGGTTACCATGATGGCAATGGTCTTTCATCACCGTACTATTCACAGTTAAATGGAAAAAAAGATGGAGACTGCTTTGGTAGAGAGAGGGAAAGCGTGCGCATGCATGGAGCCCCAAATGGGGCCGTAAAGTAA	1269	0.431	MIFVCEKWEFSFQYGSFAGTKESMGKKRKTCVKMPGKPDTDDWRAERGEQIQFQSSIFSQSQPWWQGVRGNASKSSSADQQNGSVMNGVAQSETNEGLLHGVDFNKQMQPGADKSGGDVAKEHQSIKHALSSTPYTVGKHLVPNSQMELVGHSVVLTSYPYSDAQYGGLLTNFGQQAMINPQLYGIHHTRMPLPLEMEEEPVYVNAKQYHGILRRRQSRAKAELEKKVIKARKTMEDYLSCFICWTADIRFVVKISLAILLSIRTCVFFCLEINAQICWGLEGNPEVTFPYLHESRHLHALRRARGNGGRFLNTKKLEGNSSDGTIGNNNGANPLTLSGSSSAAHHLVTNNGILVSSNDQYGASQSMVEDIHQVQSFTIGYHDGNGLSSPYYSQLNGKKDGDCFGRERESVRMHGAPNGAVK	422

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lal2g0881	422	ProSiteProfiles	NF-YA/HAP2 family profile.	198	314	IPR001289	GO:0003700\|GO:0006355
	Lal2g0881	422	Pfam	CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B	290	311	IPR001289	GO:0003700\|GO:0006355
	Lal2g0881	422	Pfam	CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B	200	234	IPR001289	GO:0003700\|GO:0006355
	Lal2g0881	422	Coils	Coil	214	234	-	-
	Lal2g0881	422	MobiDBLite	consensus disorder prediction	105	125	-	-
	Lal2g0881	422	PANTHER	TRANSCRIPTION FACTOR Y SUBUNIT A-1, PUTATIVE-RELATED	56	234	-	-
	Lal2g0881	422	PANTHER	TRANSCRIPTION FACTOR Y SUBUNIT A-1, PUTATIVE-RELATED	289	421	-	-
	Lal2g0881	422	ProSitePatterns	NF-YA/HAP2 subunit signature.	203	223	IPR018362	GO:0003677\|GO:0016602
	Lal2g0881	422	PANTHER	TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED	56	234	IPR001289	GO:0003700\|GO:0006355
	Lal2g0881	422	PANTHER	TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED	289	421	IPR001289	GO:0003700\|GO:0006355
	Lal2g0881	422	MobiDBLite	consensus disorder prediction	67	86	-	-
	Lal2g0881	422	Gene3D	-	198	316	-	-
	Lal2g0881	422	SMART	cbf3	256	314	IPR001289	GO:0003700\|GO:0006355
	Lal2g0881	422	SMART	cbf3	197	254	IPR001289	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal2g0881	Lal-Chr2	5737309	5743003	Dispersed/Transposed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	NF-YA	Lal2g0881		CBFB_NFYA	6.8e-11	No_clan

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lal2g0881	2	5737309	5743003	Lal2g0881	2	5737309	5743003	ECH