Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal2g0877 ATGAGGAAACCTGATTTGATGGGAAAAGACAACCTTAAAATGAAGTTAAGGAAGGGTTTGTGGTCACCTGAGGAAGATGAGAAGCTGATAAGGTACATGTTAACTAATGGACATGGTTGTTGGAGTGACATTGCTAGAAATGCTGGTCTCTTAAGGTGTGGCAAAAGTTGTCGTCTTCGTTGGATTAATTACTTGAGACCTGACCTTAAACGTGGTGCATTTTCACAACAAGAGGAAGACCTTATCATTCATTTGCATTCCCTTCTTGGAAATAGGTGGTCTCATATTGCAGCACGATTATCTGGACGCACGGACAATGAAATAAAGAATTTTTGGAACTCTACATTGAAGAAAAGGTTGAAAATGAACACTTCCACTACATCACCAAACAATAGATCAGAGCCTAATGATATTTTGGGTGGGATCATGCCCATTAATGAACATGACCTCATGACTATGTGCATGGATTCCTCTACATCAACTTCATCATCATCCATGCAATCCATGGTTTTTGCTGAGCAATTTGATCCTTTTTCCACGTTGATAAATAATAATCACTATGACATGACTACTGTTTCAGCAGGTTTCCCTCACATTCCACCATGCATGAACCAAGTTGGCAATGTAGAGGGGCATCATGGTAATTATGGGGTATTGGAGCTTAATAACAAGATGGAGTTATTAGAAAGAGACTTCTCACTTCCTCCACTAGAAGGTAGAAGAAGCATTGAAGGCAATAGTGCCCTAATTGATGTGAAAAGCCATAACAACCACTTCAATAATAGTTGCTTCAATAACACTAATCAGATTCAGAGCACCAAAGTAGAGGATTTGTTTGGGTTTGAAAATCATGGGCTAGGGGTGGAAAACTTAAAAATGGGAGAATGGGATTTTGAGGGTTTGATGCAAGACATATCCTCTTTTCCTTTCCTCGATTTCCAAGTTGACCAATAA 954 0.392 MRKPDLMGKDNLKMKLRKGLWSPEEDEKLIRYMLTNGHGCWSDIARNAGLLRCGKSCRLRWINYLRPDLKRGAFSQQEEDLIIHLHSLLGNRWSHIAARLSGRTDNEIKNFWNSTLKKRLKMNTSTTSPNNRSEPNDILGGIMPINEHDLMTMCMDSSTSTSSSSMQSMVFAEQFDPFSTLINNNHYDMTTVSAGFPHIPPCMNQVGNVEGHHGNYGVLELNNKMELLERDFSLPPLEGRRSIEGNSALIDVKSHNNHFNNSCFNNTNQIQSTKVEDLFGFENHGLGVENLKMGEWDFEGLMQDISSFPFLDFQVDQ 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal2g0877 317 CDD SANT 73 116 IPR001005 -
Lal2g0877 317 Pfam Myb-like DNA-binding domain 18 65 IPR001005 -
Lal2g0877 317 Pfam Myb-like DNA-binding domain 71 115 IPR001005 -
Lal2g0877 317 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 13 65 IPR017930 -
Lal2g0877 317 ProSiteProfiles Myb-like domain profile. 13 65 IPR001005 -
Lal2g0877 317 CDD SANT 21 65 IPR001005 -
Lal2g0877 317 SMART sant 70 118 IPR001005 -
Lal2g0877 317 SMART sant 17 67 IPR001005 -
Lal2g0877 317 PANTHER TRANSCRIPTION FACTOR MYB83 9 315 - -
Lal2g0877 317 Gene3D - 15 71 - -
Lal2g0877 317 Gene3D - 72 137 - -
Lal2g0877 317 SUPERFAMILY Homeodomain-like 15 112 IPR009057 -
Lal2g0877 317 ProSiteProfiles Myb-like domain profile. 66 116 IPR001005 -
Lal2g0877 317 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 120 IPR017930 -
Lal2g0877 317 PANTHER MYB DOMAIN PROTEIN 55 9 315 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal2g0877 Lal-Chr2 5698353 5701208 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lal2g0877 Myb_DNA-binding 7.2e-13 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal2g0877 2 5698353 5701208 Lal2g0877 2 5698353 5701208 ECH