Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal2g0738 ATGAGACGAGTGAAGAATGATGGGATTGAAGATGAGATGCTCCCCAACGATCTGATAGAGTCACAGTTAAATGATGAGGGTGATGGGGGAAGTGCCAGTGGAGTTATTCTGAAGAAAGGTCCATGGACATCTACTGAAGATGCGATTTTGGTTGAATATGTGAAGAAGCATGGGGAGGGGAACTGGAATGCTGTTCAGAAGCATTCGGGCCTGTCACGTTGTGGAAAAAGTTGCCGATTGCGGTGGGCCAATCACCTAAGGCCAAATTTAAAGAAAGGGGCGTTTACTGCACAAGAGGAGCAGTTGATTACTGAACTTCATGCAAAAATGGGAAACAAGTGGGCACGCATGGCGGCGCATTTGCCTGGTCGCACTGACAATGAGATAAAGAACTACTGGAACACCCGAACCAAGAGGCGTGAACGGGCTGGCTTGCCACTTTATCCTCCTGAAGTGTGTTTGCAAGCATTCCAAGAGAGTCAACATAGGCAAAGCACTGGTGGAGGAGTTAGTGCTGGCAATAAAGTGCATCGTGATTTCTTGCACAAAAACAGTTATGAGATACATGATGCAATATTTGACAGTCTGAAGGATAACCAGGGAATCTCACCTTATGTGCCTGAGCTTCCTGATATTTCTGATTATAGCAATATGATGAAAGATCTTAATTCTTCTCAGTACTTTAATTTTGCGCCGTCAACATCACCTAACCATAAGCGTCTTCGAGAGTCAACAATGCAATTTCTTGGTTCTGGTGATATGCACAGAAATGTGTTTTATCCATTTGATCATATTCAGGATAATGCCTCATTTGGAATGCAATCACTCCTTGATCATGGCCCCTCCTCACACAGCTCAATGTGTTACAGCCATTCATTTTCAAATGGCAATTCCTCTACTTCAAAGCCTACTTATGAGGCTGTGAAGCTGGAGCTCCCTTCACTCCAATATCCGGATATTGATTTAGGTAGCTGGGGTACATCTCCCCCACCTCCTTTGCTTGATTCGGTTGATGATTTCATTCAGTCTCCAACACCAATTAGTGCAATGGAGTCAGATAGTTCTTCCCCACATAATAGTGGCCTTCTGGATGCTTTAGTTTATCAGGCAAAGACTATGAGCAGCTCCAAGAACCATTATTCTAACAGGAGTTCAAACTCATCTACTGCAACTCCTGGTCACAGAGCAGACAGCTCCACGCTGAACATGTGCGAGACAGAATGGGAAGACAATACTGACCCTGTATCTCCATTTGGTGCAACTTCAATATTGAATGAATCCCCTGCTGTTGCCAATGCAAATTCATTTGATGAAACGCCGCCCCATCGGGCCTTCAATGGCAACATTGTGAAATTAGAGTCTGCTGACCAGGTTTGGACCCCGAACAGTGAAAATCAAAACCTGTCTGAATTGAATATTACTAGGCCAGACTTGTTGCTTGATGCAGATTGGCTCCATCATGATTTTGGGGATGGCAACGACCAAACCATCATGACGGATGCTATGTCAACCCTTTTTGCAGATGATTTAGCCGTTGACTACAAGCATATGGCTGTTGGAACTTCTAAATCGAGTCAAGTATGGGGCTTTGGTTCTTGTGCTCAGAACAACAATGCCTTCTGTCTGTCAGGTGTCTGA 1638 0.4451 MRRVKNDGIEDEMLPNDLIESQLNDEGDGGSASGVILKKGPWTSTEDAILVEYVKKHGEGNWNAVQKHSGLSRCGKSCRLRWANHLRPNLKKGAFTAQEEQLITELHAKMGNKWARMAAHLPGRTDNEIKNYWNTRTKRRERAGLPLYPPEVCLQAFQESQHRQSTGGGVSAGNKVHRDFLHKNSYEIHDAIFDSLKDNQGISPYVPELPDISDYSNMMKDLNSSQYFNFAPSTSPNHKRLRESTMQFLGSGDMHRNVFYPFDHIQDNASFGMQSLLDHGPSSHSSMCYSHSFSNGNSSTSKPTYEAVKLELPSLQYPDIDLGSWGTSPPPPLLDSVDDFIQSPTPISAMESDSSSPHNSGLLDALVYQAKTMSSSKNHYSNRSSNSSTATPGHRADSSTLNMCETEWEDNTDPVSPFGATSILNESPAVANANSFDETPPHRAFNGNIVKLESADQVWTPNSENQNLSELNITRPDLLLDADWLHHDFGDGNDQTIMTDAMSTLFADDLAVDYKHMAVGTSKSSQVWGFGSCAQNNNAFCLSGV 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal2g0738 545 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 34 90 IPR017930 -
Lal2g0738 545 PANTHER TRANSCRIPTION FACTOR, PUTATIVE-RELATED 1 538 - -
Lal2g0738 545 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 91 141 IPR017930 -
Lal2g0738 545 ProSiteProfiles Myb-like domain profile. 37 86 IPR001005 -
Lal2g0738 545 MobiDBLite consensus disorder prediction 374 398 - -
Lal2g0738 545 ProSiteProfiles Myb-like domain profile. 87 137 IPR001005 -
Lal2g0738 545 SMART sant 38 88 IPR001005 -
Lal2g0738 545 SMART sant 91 139 IPR001005 -
Lal2g0738 545 Gene3D - 38 91 - -
Lal2g0738 545 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 1 538 - -
Lal2g0738 545 SUPERFAMILY Homeodomain-like 38 133 IPR009057 -
Lal2g0738 545 Pfam Myb-like DNA-binding domain 92 135 IPR001005 -
Lal2g0738 545 Pfam Myb-like DNA-binding domain 39 86 IPR001005 -
Lal2g0738 545 CDD SANT 41 86 IPR001005 -
Lal2g0738 545 Gene3D - 94 140 - -
Lal2g0738 545 CDD SANT 94 135 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal2g0738 Lal-Chr2 4661260 4666069 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal2g0738 36 537 MYB Transcription Factor Family AT3G11440 43.264 5.45e-123 370
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lal2g0738 Myb_DNA-binding 2.9e-15 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal2g0738 2 4661260 4666069 Lal2g0738 2 4661260 4666069 ECH
Lal1g0663 1 4338016 4342850 Lal2g0738 2 4661260 4666069 LSH