Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal2g0712 ATGGCACATAAACCAGGTTCTGTTCAAGATTTCGGTGCACTTCGAGAATTATTGAAGCCTCATATAGAGTCATTCGATTACATGGCTGATCAAGGTTTACAAATCATGTTCCAACACATCGCACCCGTTCAATGTAGACAGGCAAAGGTTTCATATACAGGTAAGTTCACTGCAGATGTTTGCTTTCAATATGATGGCGGGGCTATCATAAGAGAGAATGTTGATTTGGGGCAGTTTCCCATAATGCTACAGTCAAAGTTATGTAATTTGAAAGATGCTGATCCCAGGAAACTTGCATCTTACAAGGAGGAAGCATCGGAAATGGGTGGTTACTTCATTTTGAATGGCCTTGAGAGAGTTGTTCGACTACTAATTCTACCAAAACGGAATTATCCAATGAGTATGGTGCGTAGTTCATTTAGTGACCGGCGGGAAGGATATACTGATAAAGCAGTTGTAATAAGGTGTGTGAGAGCAGATCAATCATCTGTGTCGGTAAAACTGTATTACCTTAATAATGGGAGTGCAAGACTAGGTTTCTGGATGAGAGGAAGGGAGTACTTGCTTCCTGTTGGCATTGTTTTGAAGGCCCTCATTGACACAACTGACCGTGAAATTTATGTAAATTTGACTAGCTGCTATAATGAGAAGTATGAAAAGGGAAAGGGTGTTGTTGGAACTCAGCTTGTTGGTGAAAGGGCAAAAATAATTTTAGATGAAGTTAGAAATTTGTCTCTCTTCACTCGTCTGCAATGTCTAGAGTATATTGGAGAGCATTTCCAACCTATGATGGCTCAGTTTATTGTGAATGACAGCTTTTCAATTGTGGCTGAGTCTGTTCTGAACAATTATTTATTTGTTCATCTGGATAAGAATTTTGACAAATTCAATCTTCTCATCTTTATGTTGCAGAAACTATTCTCACTTGTAGATCAGACATCAGTACCAGACAACCCTGATTCCTTGCAAAATCAGGAGGTTTTACTCCCAGGCCATCTTATTACGCTATATCTCAAGGAAAAACTGGAAGATTGGCTGCAAAAGGGAAAGAAGCTCCTGCAGGATGAGCTAAAAAAGCAAAGCAAGACATTTAATTTCGGTGACATTATTCAAGTTAAGAAATTGATGGGTAAAAATGTAGCAAAGCAAATCAGTACAGCTGTTGAAAATATGTTGAAAACTGGAAGATTGGTTACACAAACAGGTCTAGATCTTCAGCAGAGGGCAGGCTATACAGTTATGGCCGAGCGGCTAAACTTCTTACGGTTTATTTCACATTTTCGTTCCGTTCATCGTGGAGCCTCATTTGCTGGACTTCGCACTACAACAGTGCGGAAGCTGTTGCCTGAATCTTGGGGCTTTCTTTGCCCTGTACACACACCTGATGGAGAACCCTGTGGATTGTTGAACCACATGACTTGCACTTGTAGGATTACCTCATTCTTTGATTCTCAAGGAAACATCAAAAAGGATTATTCTGAAATAAAGAAATCCATCCTCAAAGTTTTAATTGAGGTTGGGATGACACAGGCATTGCCAAAACTAGTTCTTCCTGGCCCGCCTCAAGTTCTTACTGTTCTTTTAGATGGTTGTATTGTTGGTTGTATACCTTCGAGTCAAGTTGAGAAAGTTGTTGCTCACATACGAGCATTTAAAGTGTCATCTTCTGAAGAGATTCCTGATGATCTGGAAGTGGGTCATGTTCCATTGAGCATGGGCGGAGCATATCCTGGTCTCTACCTGTTCACTTCCCCTTCAAGATTTGTACGGCCAGTGAGAAATATATCAATTCCTTCTGATGGTGACAAAAATATTGAACTTATTGGACCATTTGAGCAGGTTTTTATGGAGATAAGATGTCCCGATGGTGGAGATGGTGGAAGAAAAAGTTCATTTCCTGCAACCCACGAGGAAATTCATCCAACAGGAATGCTTAGTGTTGTTGCTAATCTTACGCCATGGTCAGATCATAATCAGAGCCCAAGAAATATGTACCAGTGTCAGATGGCAAAACAAACTATGGCATTCTCTTCCCAAACAATTCAACATCGTGCAGACCAGAAGCTATACCATCTTCAGACTCCTCAATCTCCCATTGTGCGCACAAGTGCATATACTAAGTATAGCATTGACGAATTTCCAACAGGAACGAATGCAATAGTTGCAGTTCTGTCATATACTGGATATGATATGGAGGATGCCATGATTTTAAATAAGTCAGCAGTGGAACGTGGAATGTTTCATGGACAAATATATCAGACCGAAACTATTGACTTGAATGACCAAGGCCGCAAGTCAGACCGATCTTCAAGAATGTTCAAAAAAAGTAATGTAGAGAAATTTGCTTGTCCCTCGCTAGATTCAGATGGGCTTCCACATGTTGGTCAGATGATACGACCAGATGAGCCTTATTGTAGCATTTTTAATGAAGTAACAAGTTCCACACATAACTTGAAGAAAAAAGGTTCTGAACCTGTTTATGTTGACTATGTAGCTGTTGATGTAAAAAACAAGAAACACCTTCAGAAGGTTAACATACGCTTTCGACATCCACGAAACCCAGTCATTGGTGATAAATTTAGTAGTAGACATGGACAAAAAGGTGTTTGCTCTCAGTTGTGGCCAGATATTGATATGCCATTTTCTGGAACTACTGGGATGCGCCCAGATCTCATTATCAATCCTCATGCATTTCCTTCCAGGATGACAATTGCAATGCTTTTGGAATCTGTGGCGGCTAAGGGAGGCAGCATACACGGAGAATTCATAGATGCAACACCATTCCGTAATTCAGTGAAGAAAGAAAGTGAGGAGTCTGGGTCAAAGTCTGGTTCACTTGTTGATGAACTTGGTCTCAAATTAAAAGAAAAGGGATTCAACTATCATGGTTTGGAAGTCCTGTACAGTGGTGTCTATGGAACAGAACTAACATGTGAGATCTTTATTGGGCCTGTTTATTATCAGCGGCTGCGTCACATGGTTTCGGACAAATTTCAGGTTCGATCTACTGGAACTATAGATCAGGTCACCCGGCAGCCAATAAAAGGACGAAAGCGTGGTGGTGGAATTCGATTTGGGGAAATGGAACGTGACTCTCTACTTGCTCATGGAGCAGCATATCTTCTACATGATAGGTTGCATACCTGTTCTGATTATCACATTGCTGATGTATGTTCCATATGTGGAAGCATGCTCAATACAACATTCATCCAGCCACTAAAGCGGCCGGTACGAGAGATCGGTGGGCTACCCCCAGGAAGAGCTCCAAAAAAGGTCATGTGTCATGCTTGCAAAACAAGCAAGGGTATGGAGACGGTGGCCATGCCGTATGTATTCCGATATTTAGCAGCGGAATTAGCAGCAATGAACATAAAAATGACTCTTAAGTTAAGTAATGGAGCTGGAGCCTGA 3411 0.411 MAHKPGSVQDFGALRELLKPHIESFDYMADQGLQIMFQHIAPVQCRQAKVSYTGKFTADVCFQYDGGAIIRENVDLGQFPIMLQSKLCNLKDADPRKLASYKEEASEMGGYFILNGLERVVRLLILPKRNYPMSMVRSSFSDRREGYTDKAVVIRCVRADQSSVSVKLYYLNNGSARLGFWMRGREYLLPVGIVLKALIDTTDREIYVNLTSCYNEKYEKGKGVVGTQLVGERAKIILDEVRNLSLFTRLQCLEYIGEHFQPMMAQFIVNDSFSIVAESVLNNYLFVHLDKNFDKFNLLIFMLQKLFSLVDQTSVPDNPDSLQNQEVLLPGHLITLYLKEKLEDWLQKGKKLLQDELKKQSKTFNFGDIIQVKKLMGKNVAKQISTAVENMLKTGRLVTQTGLDLQQRAGYTVMAERLNFLRFISHFRSVHRGASFAGLRTTTVRKLLPESWGFLCPVHTPDGEPCGLLNHMTCTCRITSFFDSQGNIKKDYSEIKKSILKVLIEVGMTQALPKLVLPGPPQVLTVLLDGCIVGCIPSSQVEKVVAHIRAFKVSSSEEIPDDLEVGHVPLSMGGAYPGLYLFTSPSRFVRPVRNISIPSDGDKNIELIGPFEQVFMEIRCPDGGDGGRKSSFPATHEEIHPTGMLSVVANLTPWSDHNQSPRNMYQCQMAKQTMAFSSQTIQHRADQKLYHLQTPQSPIVRTSAYTKYSIDEFPTGTNAIVAVLSYTGYDMEDAMILNKSAVERGMFHGQIYQTETIDLNDQGRKSDRSSRMFKKSNVEKFACPSLDSDGLPHVGQMIRPDEPYCSIFNEVTSSTHNLKKKGSEPVYVDYVAVDVKNKKHLQKVNIRFRHPRNPVIGDKFSSRHGQKGVCSQLWPDIDMPFSGTTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSIHGEFIDATPFRNSVKKESEESGSKSGSLVDELGLKLKEKGFNYHGLEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTIDQVTRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHIADVCSICGSMLNTTFIQPLKRPVREIGGLPPGRAPKKVMCHACKTSKGMETVAMPYVFRYLAAELAAMNIKMTLKLSNGAGA 1136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal2g0712 1136 PANTHER DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA2 13 1128 - -
Lal2g0712 1136 Pfam RNA polymerase Rpb2, domain 2 148 327 IPR007642 GO:0003677|GO:0003899|GO:0006351
Lal2g0712 1136 ProSitePatterns RNA polymerases beta chain signature. 857 869 IPR007121 GO:0003677|GO:0003899|GO:0006351
Lal2g0712 1136 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 8 1132 - -
Lal2g0712 1136 Gene3D RNA polymerase Rpb2, domain 2 130 313 IPR037034 GO:0003677|GO:0003899|GO:0006351
Lal2g0712 1136 CDD RNA_pol_B_RPB2 17 1129 IPR015712 GO:0003899|GO:0006351|GO:0032549
Lal2g0712 1136 Gene3D RNA polymerase alpha subunit dimerisation domain 1006 1132 - -
Lal2g0712 1136 Gene3D - 649 1004 IPR037033 GO:0003677|GO:0003899|GO:0006351
Lal2g0712 1136 Pfam RNA polymerase Rpb2, domain 3 414 478 IPR007645 GO:0003677|GO:0003899|GO:0006351
Lal2g0712 1136 PANTHER DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2 13 1128 IPR015712 GO:0003899|GO:0006351|GO:0032549
Lal2g0712 1136 Pfam RNA polymerase Rpb2, domain 6 648 1019 IPR007120 GO:0003677|GO:0003899|GO:0006351
Lal2g0712 1136 Pfam RNA polymerase beta subunit 38 374 IPR007644 GO:0003677|GO:0003899|GO:0006351
Lal2g0712 1136 Pfam RNA polymerase Rpb2, domain 7 1021 1129 IPR007641 GO:0003677|GO:0003899|GO:0006351
Lal2g0712 1136 Gene3D - 8 129 - -
Lal2g0712 1136 Gene3D - 314 514 - -
Lal2g0712 1136 Pfam RNA polymerase I, Rpa2 specific domain 533 590 IPR009674 GO:0003899|GO:0005634|GO:0006351
Lal2g0712 1136 Gene3D - 679 853 IPR014724 GO:0003899
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal2g0712 Lal-Chr2 4388235 4403155 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal2g0712 2 4388235 4403155 Lal2g0712 2 4388235 4403155 ECH
Lal1g0652 1 4256828 4258429 Lal2g0712 2 4388235 4403155 LSH