Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal2g0646 ATGAAGATTCAATGTAACGTATGTGAAGCTGCAGAGGCTAAGGTCCTGTGCTGTGCAGATGAGGCAGCATTGTGCTGGGAATGTGATGAGCAGGTTCATGCAGCTAACAAGCTCGCTAGTAAGCACCAGAGAGTCTCTCTTTCTATTTCGGCTTCTCAACTGCCCAAGTGTGACATATGTCAGGATACAGTTGGCTATTTCTTCTGTCTGGAGGATCGGGCTTTACTATGCAGGAATTGTGATGTAGTAATACACACAGTAAATGCCCATGTCTCTGCACATCAAAGGTTTCTGCTTACTGGTGTAAGAGTAGGCCTTGAAGCTACCAAGCCTGGTGCTTCCTCATCTCTTGCAAAGTCACATTCTGAGGAGAAAATGTCAAATACTAAATCTTCTTCCATCTCAGTAAATGTTTCCCCATTGCCACAGTCATTCAATCACAATGAAGTGTTACCCATCCAAGTTGGAAGAGTTGGGGAGTTTCCACCACCTAAAGTGTCCTATGGTGGTGATTCTACAGTTGGAAACATCTCACAATGGCCCATTGATGAATTTCTGTGGTCAAGTGAATTCAGTCAGAATTATAATTGCATGGGTGGATCATCGAAGGTTGACAGTGGTAAACTTTGGGATTCTGATTCTTCTCTTGTAAGATCGTGTGAAGCGGAAATGGATAACGATGATTTCTTGGGGTGTGTTCCAGATTCGTGCTGGACAGTTCCACAGATTCCTTCCCCTCCTACAGCTTCGGAGTTATATTAG 762 0.4396 MKIQCNVCEAAEAKVLCCADEAALCWECDEQVHAANKLASKHQRVSLSISASQLPKCDICQDTVGYFFCLEDRALLCRNCDVVIHTVNAHVSAHQRFLLTGVRVGLEATKPGASSSLAKSHSEEKMSNTKSSSISVNVSPLPQSFNHNEVLPIQVGRVGEFPPPKVSYGGDSTVGNISQWPIDEFLWSSEFSQNYNCMGGSSKVDSGKLWDSDSSLVRSCEAEMDNDDFLGCVPDSCWTVPQIPSPPTASELY 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal2g0646 253 MobiDBLite consensus disorder prediction 113 133 - -
Lal2g0646 253 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Lal2g0646 253 SMART bboxneu5 4 47 IPR000315 GO:0008270
Lal2g0646 253 SMART bboxneu5 52 99 IPR000315 GO:0008270
Lal2g0646 253 MobiDBLite consensus disorder prediction 112 133 - -
Lal2g0646 253 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Lal2g0646 253 PANTHER B-BOX ZINC FINGER PROTEIN 18 1 253 - -
Lal2g0646 253 Pfam B-box zinc finger 53 90 IPR000315 GO:0008270
Lal2g0646 253 CDD Bbox1_BBX-like 5 47 - -
Lal2g0646 253 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 253 - -
Lal2g0646 253 CDD Bbox1_BBX-like 56 99 - -
Lal2g0646 253 Gene3D Classic Zinc Finger 1 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal2g0646 Lal-Chr2 3872976 3880526 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal2g0646 1 252 C2C2-CO-like Transcription Factor Family AT1G78600 50.175 5.34e-78 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lal2g0646 zf-B_box 5.7e-07 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal2g0646 2 3872976 3880526 Lal2g0646 2 3872976 3880526 ECH