Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal2g0643 ATGGGTAAATTCTTCCCTTCATTTCCCTTTCTTTTACTCCTCCTTCTTTGCCTCACATCATTCTCTTTTGGAGCCACTCTTGTACAAGATGAAGTGGAAGCTCTGAGAGACATAGGGAATACACTTGGGAAGAAGGATTGGAACTTCAGTGTAGATCCATGTAGTGGACAGAGTAACTGGAAATTGGTTAATCAATCAGAAGGCTCAGAAAATAGTGTTACATGCAATTGCTCTTTTGCCAATAACACTGCCTGCCATGTAATTAGCATTGTTTTGAAATCACAAAATCTTTCTGGTACTCTCCCACCAGAGCTTGTGAGGTTGCCTTACCTACAGGAAATTGACCTCACCCTCAACTACCTTAATGGTACAATTCCTAGACAATGGGGTACCTTAAATCTTGTCAACATTTCATTTTTGGGAAACCGTGTAACTGGTCCTATCCCAAAGGAGCTTGGAAATATCACCACTCTCAGAAGTTTGGTATTGGAGTTCAATCAATTATCTGGAATTCTTCCTCCAGAACTTGGGAATCTTACGCAAATTGAAAGACTGCTAATTACCTCCAACAATTTCACTGGAGAAATACCTGCAACATTTGCTAAGCTCACAACATTGAAGCATGTAAGAATTGGTGACAATCAATTCTCTGGAGCAATACCAGATTTTATACAGAGCTGGATAAATCTTGACACACTTGTGATCCAAGGGAGTGGTTTCAGTGGGCCAATTCCTTCCGGAATTTCACTTCTGAAAAACCTTACTGACTTGAGAATTACTGACTTGATTGGATCTGATTCACCTTTTCCACAACTTAATAATATGTCAAATTTGGAAACACTAATATTGAGGAGTTGCAATATTACTGGAGCATTGCCTGAACATCTTGGAAACTTGATTAGTTTGCAACTATTAGACCTAAGCTACAACAAATTAAGTGGGCCAATCCCAAGCAGTTTTGATGGTCTACAGAATCTGGATATGCTATTTTTAGCTGGGAATAATCTCACTGGACCGCTGCCTCCTTGGAGTTATAAACCAGACTTTGTAGATCTCTCATATAACAACTTCAACATCGGAAACTTAGAGCAGCAGACTTGTCAACAGGGAAGCGCGAACTTGTTTTCATCCTCCTCAAATGGAAACAGCTTAGGAAATGTTTCATGTTTGGCAAATGTTCAGTGTCCTAAAAGTAAGTTGAGTTATCTTGGATTTTCCTATGAATTGTTAAGTATCATCTTAACATTTGAAGCATTGTACTCTCTCTATATAAATTGTGGTGGAAAGCTCATAACTTCTAATGGGAGTAAGTCATATGAAGATGATTCAAGTGACATGGGAGCAGCTAGATTTCGTCAAACTGGAACAAACTGGGCAGTTATGACTGGTGGTCACTTCTTGGATAGTGGTCGCTCAGACTACTATAAATGGTCTAATACAACTAAGCTTGCTATGGACAATGCTGAACTATATATGGATGCACGTGTTTCTCCCAATTCTCTGACTTATTATGGATTTTGCTTGGGAAATGGAAACTACACAGTGAATCTCCATTTTGCAGAAATAATGTTCACCAATGATAAAACATATAGCAGTCTCGGAAGGCGAGTATTTGACATCTACATTCAGAGAAAGTTGGTAGTGAAGGATTTCAATATTGCAGAGGAAGCAGGGGGTTTTGATAAGGCAGTCATAAAAAATTTCACTGCTGTTGTCACTAGTAATGCCTTGGAGATCCGCTTACATTGGGCTGGCAAAGGGACAACTTCTATCCCATTTGGGTCAGTATATGGTCCTCTTATATCAGCTATATCTGTTCATTCTGACTTTACACCCCCATCGGAAAACGGTACTAGCATATCTACAGGGGTTGTGGTTGCAATAGTGGCTGCAGGAGTAATAATCATCATCTTGGTATTTGGCATACTTTGGTGGAAGGGCTGTTTAGGACAGAAAAGATCTGTGGCAAGAGCTCTGAAGGGTTTAGACTCCAATGCTGGCTTATTTACCTTAAGACAAATCAAAGCAGCAACGAATAACTTTGATAGGGCCTTCAAGATTGGAGAAGGAGGGTTTGGTCCTGTTTACAAGGGCGTTCTTTCAGATGGCAGAATAGTAGCAGTTAAGCAACTTTCTGCTAAATCAAGGCAAGGGAATCGTGAATTCATTAACGAGATAGGGCTGATTTCCGCTTTGCAACACCCCTGCCTAGTTAAGCTATATGGCTTCTGTATGGAGGAGGATCAATTGTTGCTGATATATGAATACATGGAAAATAATAGCCTTGCTCGTGCTTTATTTGTCAGAAATGATGACCCAGAGAAATCTCCTTTGAGATTGGACTGGGAAACAAGGCAGAGGATTTGTGTTGGTATTGCTAAAGGCCTGGCTTACCTTCATGAAGAGTCAAGACTGAAGATTGTTCACAGGGACATCAAGGCCACTAATGTATTGCTGGATAAAGATCTCAACCCAAAGATATCTGATTTTGGTTTAGCCAAGCTCAAAGAAGAGGACACTACCCACATAAGCACCAGAATAGCCGGCACTTATGGGTACATGGCTCCCGAGTATGCAATGCATGGTTATTTAACTGACAAAGCAGATGTGTATAGTTTTGGATTAGTTGCATTGGAAATTGTTAGTGGGATGAGCAACACCATTAGTCAGCTCACAGAAGAGTGCTTCTCGCTTCTTGATTGGGTGCATGTGTTGAAAGAAAAAGGTAACCTGATGGAGCTTGTTGATAAAAGGTTGGGTGGAGAATTCAACAAAGAGGAGGCAATGTTGATGATCAAAGTGTCTCTTTTATGCACAAATTTTTCTCCAACACTTAGGCCTGCCATGTCTTCAGTGGTAAACATGCTTGAAGGAAGAAGTGTTGTGCAAGAGGTTTCAAACACAAATGAGGCATTGGATGATAAGAAATTTGAGATGATGAAACATTATTACCAATAG 2958 0.4016 MGKFFPSFPFLLLLLLCLTSFSFGATLVQDEVEALRDIGNTLGKKDWNFSVDPCSGQSNWKLVNQSEGSENSVTCNCSFANNTACHVISIVLKSQNLSGTLPPELVRLPYLQEIDLTLNYLNGTIPRQWGTLNLVNISFLGNRVTGPIPKELGNITTLRSLVLEFNQLSGILPPELGNLTQIERLLITSNNFTGEIPATFAKLTTLKHVRIGDNQFSGAIPDFIQSWINLDTLVIQGSGFSGPIPSGISLLKNLTDLRITDLIGSDSPFPQLNNMSNLETLILRSCNITGALPEHLGNLISLQLLDLSYNKLSGPIPSSFDGLQNLDMLFLAGNNLTGPLPPWSYKPDFVDLSYNNFNIGNLEQQTCQQGSANLFSSSSNGNSLGNVSCLANVQCPKSKLSYLGFSYELLSIILTFEALYSLYINCGGKLITSNGSKSYEDDSSDMGAARFRQTGTNWAVMTGGHFLDSGRSDYYKWSNTTKLAMDNAELYMDARVSPNSLTYYGFCLGNGNYTVNLHFAEIMFTNDKTYSSLGRRVFDIYIQRKLVVKDFNIAEEAGGFDKAVIKNFTAVVTSNALEIRLHWAGKGTTSIPFGSVYGPLISAISVHSDFTPPSENGTSISTGVVVAIVAAGVIIIILVFGILWWKGCLGQKRSVARALKGLDSNAGLFTLRQIKAATNNFDRAFKIGEGGFGPVYKGVLSDGRIVAVKQLSAKSRQGNREFINEIGLISALQHPCLVKLYGFCMEEDQLLLIYEYMENNSLARALFVRNDDPEKSPLRLDWETRQRICVGIAKGLAYLHEESRLKIVHRDIKATNVLLDKDLNPKISDFGLAKLKEEDTTHISTRIAGTYGYMAPEYAMHGYLTDKADVYSFGLVALEIVSGMSNTISQLTEECFSLLDWVHVLKEKGNLMELVDKRLGGEFNKEEAMLMIKVSLLCTNFSPTLRPAMSSVVNMLEGRSVVQEVSNTNEALDDKKFEMMKHYYQ 985
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal2g0643 985 Pfam Protein kinase domain 685 888 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal2g0643 985 Gene3D - 419 609 - -
Lal2g0643 985 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 408 968 - -
Lal2g0643 985 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 288 341 - -
Lal2g0643 985 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 74 288 - -
Lal2g0643 985 Pfam Malectin domain 421 604 IPR021720 -
Lal2g0643 985 ProSitePatterns Serine/Threonine protein kinases active-site signature. 807 819 IPR008271 GO:0004672|GO:0006468
Lal2g0643 985 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 288 341 - -
Lal2g0643 985 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 408 968 - -
Lal2g0643 985 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 74 288 - -
Lal2g0643 985 Gene3D Ribonuclease Inhibitor 191 260 IPR032675 -
Lal2g0643 985 SUPERFAMILY L domain-like 47 417 - -
Lal2g0643 985 Gene3D Transferase(Phosphotransferase) domain 1 757 981 - -
Lal2g0643 985 CDD STKc_IRAK 687 958 - -
Lal2g0643 985 Gene3D Ribonuclease Inhibitor 27 190 IPR032675 -
Lal2g0643 985 Pfam Leucine rich repeat 276 336 IPR001611 GO:0005515
Lal2g0643 985 SUPERFAMILY Protein kinase-like (PK-like) 667 958 IPR011009 -
Lal2g0643 985 Gene3D Ribonuclease Inhibitor 261 373 IPR032675 -
Lal2g0643 985 Gene3D Phosphorylase Kinase; domain 1 650 756 - -
Lal2g0643 985 SMART serkin_6 681 953 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal2g0643 985 ProSiteProfiles Protein kinase domain profile. 681 962 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal2g0643 Lal-Chr2 3843840 3863839 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal2g0643 18 985 Receptor kinase-like Gene Family AT1G53420 54.555 0.0 988
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Lal2g0643 Pkinase 1.9e-46 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal2g0643 2 3843840 3863839 Lal2g0643 2 3843840 3863839 ECH