Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal2g0234 ATGGTTTTCTCTTCTTTTCCAGTCTATGTAGATCCTCCCAGTTGGCATCAGCAACCAAATCAGAACAATCACCATCAATCAAATGGAAATGATAGCCCTCAGCTGCTTCCACCTTTGCCTCCGCAAGGAGGAGGTGGTGTTGTGGGGTCAATCAGGCCGGGCTCGATGGCAGATCGAGCCCGACTAGCTAAGCTGCTTCCTCCAGACACAGCTCTAAAGTGTCCTCGCTGCAATTCCACCAACACTAAATTTTGCTACTTCAACAACTACAGCCTTTCGCAGCCGCGCTACTTCTGCAAGACTTGTAGGCGTTACTGGACGAAAGGGGGTAATCTCAGGAACGTTCCTGTTGGTGGAGGATACCGTAGGAACAAGAAGAACAAAAGGAGTCGCTCCAAATCTCCTCCATCATCTGAGAAACAAACCCTATCTAGTTCCACAAGTGCAATCCCCTCAGCTGAAAACACTCATGAGCTAATTGGTCAGATGACTCAACCACCTAACCTACCTTTCATGGCCTCTCTACAGAACCCTATGAACCGTTATGGTGTTACAAACATGGCTGGTCTCAACTTGCAAGGACAAACGGATCATATGGGCTTTCAAATTGGTGGTGGTAATTCAGCTGGTGCTGGTGGAGTGGAGCAGTGGCGGTTACAGCAGTTTCCTTTCTTGAATGGTTTTGAATCAACTTCAGCTGCTTCATACCCTTTTCAGAATGAGAGTGTTGAAGCAAATTCTGGGTTTGTTGAAGATATAGGTGCAAGTTCTAGGGTTAATAATCAGCAGCCACCAGTTAAAATGGAAGAGAGTAGAGCTCTAAATTTGTTAAGATCATCTATGAATAATACTGTCTCAGAAAATAACCAATATTATTCATGGAGTAACTTAACAGGTCTTCCTTCTTCTTCCACTAGTCATCTCTTGTGA 930 0.4495 MVFSSFPVYVDPPSWHQQPNQNNHHQSNGNDSPQLLPPLPPQGGGGVVGSIRPGSMADRARLAKLLPPDTALKCPRCNSTNTKFCYFNNYSLSQPRYFCKTCRRYWTKGGNLRNVPVGGGYRRNKKNKRSRSKSPPSSEKQTLSSSTSAIPSAENTHELIGQMTQPPNLPFMASLQNPMNRYGVTNMAGLNLQGQTDHMGFQIGGGNSAGAGGVEQWRLQQFPFLNGFESTSAASYPFQNESVEANSGFVEDIGASSRVNNQQPPVKMEESRALNLLRSSMNNTVSENNQYYSWSNLTGLPSSSTSHLL 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal2g0234 309 PANTHER DOF DOMAIN ZINC FINGER PROTEIN 15 305 - -
Lal2g0234 309 ProSitePatterns Zinc finger Dof-type signature. 74 110 IPR003851 GO:0003677|GO:0006355
Lal2g0234 309 MobiDBLite consensus disorder prediction 136 151 - -
Lal2g0234 309 MobiDBLite consensus disorder prediction 14 53 - -
Lal2g0234 309 MobiDBLite consensus disorder prediction 113 151 - -
Lal2g0234 309 Pfam Dof domain, zinc finger 70 126 IPR003851 GO:0003677|GO:0006355
Lal2g0234 309 MobiDBLite consensus disorder prediction 14 33 - -
Lal2g0234 309 ProSiteProfiles Zinc finger Dof-type profile. 72 126 IPR003851 GO:0003677|GO:0006355
Lal2g0234 309 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 15 305 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal2g0234 Lal-Chr2 1368235 1369921 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal2g0234 52 308 C2C2-Dof Transcription Factor Family AT3G55370 42.909 9.84e-47 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lal2g0234 zf-Dof 5.5e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal2g0234 - - gmx:100816635 358.992
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal2g0234 2 1368235 1369921 Lal2g0234 2 1368235 1369921 ECH
Lal2g0234 2 1368235 1369921 Lal9g0229 9 1401218 1404437 LSH
Lal25g0148 25 937322 938967 Lal2g0234 2 1368235 1369921 PCT
Lal10g1261 10 18816409 18818922 Lal2g0234 2 1368235 1369921 PCT
Lal2g0234 2 1368235 1369921 Lal25g0148 25 937322 938967 PCT
Lal2g0234 2 1368235 1369921 Lal10g1261 10 18816409 18818922 PCT