Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal2g0233 ATGGAGAACGAGATAGTGCAAATTTTGATTGAGTTGGTGAATGAGATAGCTGCGATCTCTGATTACAAACCTATGGTGAAGAAACAGTACTGCAACTTGGCTCGTAGGTTGAAGCTTCTAACCCCGATGTTCGAAGAGATTAGGGATATGAACAAAGAGGCTATCCCTCTCAACACTTTGAAAGCCTTGTTTGCTTTCAAGGATGCTCTCGAATCAGCTAGGGAGATTCTCAGATTCGGCAGTGAAGGCAGCAAGATTTACATGGTACTTGAGAGGGACCAAATTATGAATAATTTCCATGAGGCAACAGATCGGTTGGAAATAGCATTGGCTGGAATTTCCGTTGAAAAACTTGATATATCAGATGAAGTTAAGGAGCAGGTTGAGCTAGTTCTTGCCCAGTTTAGAAGAGCAAAAGGGAGGATTGATGAACCTGATGTGAAATTGTATGAGGATTTGTTGTCCCTTTACACCAAGAACAGTGATGCTGATACAGATCCAGCTGTTTTAAGTCAAATTGCTGAAAAATTGCATTTGAAGGGAGTAAACGATCTTACACAAGAATCACTTGCTTTGCATGAGATGGTGGCAGCAAGCGGTGGGGACCCAGGGGCACGCATTGAGAAAATTTCGATGCTACTGAAGAAGATAAAAGATTACGTGCAAACAGAAAATCTAGTGATGGATAATAATGTAGAAGGAAAAGGTCTTTCTTCAAGTGTCTGCAGTCAAGGGACAATTGAAAAGAATTATGAGGCTCCTATTATTCCTAATGATTTTCGGTGTCCAATTTCCTTGGAATTGATGAGGGATCCTGTTATTGTTTCAACAGGACAGACTTATGAGCGTTCTTGTATTGAGAAGTGGTTACAAGCAGGCCATGGGACTTGCCCGAAAACACATCAAACTCTCTCTAATACTGTTCTCACACCTAATTATGTCTTACGAAGCCTCATTTCACAATGGTGTGAAGCCAATGGCCTTGAACCACCAAAACGACCCAGCAGTTCTCAACCTAGTAAATCAGCACCAACCTACTCCCCATCTGAGCAAAGTAAGATTAGAAATCTTCTCCAAAGGCTCACATCTGGCAGTCTTGAAGACCAGAGATCAGCTGCAGGTGAGATCCGCCTTCTTGCAAAGCGGAATGCAGAAAATCGTGTGGCCATTGCTGAAGCTGGTGCTTTACCTCTCCTTGTTAGTCTCCTAACCATATCTGACCCCCGCACTCAAGAGCATGTTGTGACGGCACTTCTGAATCTTTCCATATGTGAAAATAACAAAGGAAGAATTGTATCTTCAGGGGCACTTCCAGGCATAGTTTATGTGCTGAAAAAAGGAAGCATGGAAGCTCGGGAAAATGCGGCAGCAACACTTTTCAGCCTTTCAGTTATTGATGAAAATAAGGTTATAATTGGTTCTTCTGGAGCCATACCACCACTAGTGTCATTGCTTAGTGAGGGTACGCAGAGGGGTAAGAAAGATGCTGCCACAGCACTGTTCAATTTGTGCATTTACCAAGGTAACAAGGGAAAGGCAGTGAGGGCTGGCGTTATTCCCACTCTGATGCGACTGTTGACAGAACCTGAGAGGGCAATGGTGGATGAAGCATTGGCCATTTTGGCAATATTGGCAAGCCATTCTGAAGGAAAAGCTGCAATTGGTTCTGCGGAGGCAGTGCCAGTTTTGGTGGAGTTAATTGGGAGTGGATCTCCAAGGAACAAAGAGAATGCAGCTGCTGTTTTGGTGCACCTCTGTTCTGGAGATCAGCAATATCTAGCACAGGCCCAAGAGCTAGGGTTGATGGGTCCATTGTTGGAAATGGCTCAAAATGGTACAGATAGAGGCAAAAGAAAGGCAGCCCAATTGCTAGAGCGTATGAGCAGATTCCTTGACCAGCAGCTGGAAGAGGAGGAGCTTCAAACACATACTGAGACTCCAGCCCTGAACGTGGACATCCAACCACTTTCTATTGCTAATCTTGGTGACAACTGA 1995 0.4406 MENEIVQILIELVNEIAAISDYKPMVKKQYCNLARRLKLLTPMFEEIRDMNKEAIPLNTLKALFAFKDALESAREILRFGSEGSKIYMVLERDQIMNNFHEATDRLEIALAGISVEKLDISDEVKEQVELVLAQFRRAKGRIDEPDVKLYEDLLSLYTKNSDADTDPAVLSQIAEKLHLKGVNDLTQESLALHEMVAASGGDPGARIEKISMLLKKIKDYVQTENLVMDNNVEGKGLSSSVCSQGTIEKNYEAPIIPNDFRCPISLELMRDPVIVSTGQTYERSCIEKWLQAGHGTCPKTHQTLSNTVLTPNYVLRSLISQWCEANGLEPPKRPSSSQPSKSAPTYSPSEQSKIRNLLQRLTSGSLEDQRSAAGEIRLLAKRNAENRVAIAEAGALPLLVSLLTISDPRTQEHVVTALLNLSICENNKGRIVSSGALPGIVYVLKKGSMEARENAAATLFSLSVIDENKVIIGSSGAIPPLVSLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVIPTLMRLLTEPERAMVDEALAILAILASHSEGKAAIGSAEAVPVLVELIGSGSPRNKENAAAVLVHLCSGDQQYLAQAQELGLMGPLLEMAQNGTDRGKRKAAQLLERMSRFLDQQLEEEELQTHTETPALNVDIQPLSIANLGDN 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal2g0233 664 Pfam Armadillo/beta-catenin-like repeat 466 504 IPR000225 GO:0005515
Lal2g0233 664 Pfam Armadillo/beta-catenin-like repeat 548 587 IPR000225 GO:0005515
Lal2g0233 664 Pfam Armadillo/beta-catenin-like repeat 383 422 IPR000225 GO:0005515
Lal2g0233 664 Coils Coil 621 641 - -
Lal2g0233 664 Gene3D - 2 116 IPR036537 GO:0007166
Lal2g0233 664 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 476 518 IPR000225 GO:0005515
Lal2g0233 664 PANTHER U BOX DOMAIN-CONTAINING 4 644 - -
Lal2g0233 664 SUPERFAMILY RING/U-box 256 332 - -
Lal2g0233 664 SMART arm_5 589 629 IPR000225 GO:0005515
Lal2g0233 664 SMART arm_5 424 464 IPR000225 GO:0005515
Lal2g0233 664 SMART arm_5 465 505 IPR000225 GO:0005515
Lal2g0233 664 SMART arm_5 506 546 IPR000225 GO:0005515
Lal2g0233 664 SMART arm_5 547 587 IPR000225 GO:0005515
Lal2g0233 664 SMART arm_5 383 423 IPR000225 GO:0005515
Lal2g0233 664 SUPERFAMILY ARM repeat 354 632 IPR016024 -
Lal2g0233 664 Gene3D - 338 644 IPR011989 -
Lal2g0233 664 ProSiteProfiles U-box domain profile. 255 329 IPR003613 GO:0004842|GO:0016567
Lal2g0233 664 Pfam U-box domain 256 326 IPR003613 GO:0004842|GO:0016567
Lal2g0233 664 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 394 436 IPR000225 GO:0005515
Lal2g0233 664 SMART Ubox_2 259 322 IPR003613 GO:0004842|GO:0016567
Lal2g0233 664 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 256 329 IPR013083 -
Lal2g0233 664 MobiDBLite consensus disorder prediction 331 352 - -
Lal2g0233 664 MobiDBLite consensus disorder prediction 328 352 - -
Lal2g0233 664 CDD RING-Ubox_PUB 260 302 IPR045210 -
Lal2g0233 664 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 517 559 IPR000225 GO:0005515
Lal2g0233 664 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 4 644 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal2g0233 Lal-Chr2 1358531 1363087 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal2g0233 7 646 U-box Gene Family AT3G46510 68.519 0.0 872
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal2g0233 - - gmx:100812160 994.956
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal2g0233 2 1358531 1363087 Lal2g0233 2 1358531 1363087 ECH