Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal2g0026 ATGTCTCCAACAAGGCCAATTGTCTCACTTTTCTTCATCCTAGCTTCCTTAAGTTCATGTTTTGGCTATCACATACAGGAACCACTTTATCAAACAAGTTCTGACCCTATGCATGATTGGAGGTTCAACAACGCAAAACATGAACGTTTTGGTTTTATGACAAGGGCTGATAGAGCTACACCTCGTTCTTCAAGGCCTCATGGAACAGTTAGTGTTGATGACTTTGGAGCCAAAGCAGATGGAAGAGATGATACTGAAGCATTTGAAAAGGCATGGAATGAAGCTTGTTCTAGAGGAGCTTTCCTTGTGGTCCCTGAAAATAGGATCTATTTTCTTAAGCCAATAACATTTTCAGGTCCATGTCAACCCAACACTGCCTTTATGATCTATGGAACAATCAAGGCATGGCCTGTAATGTCTGCATATGAACAAGATAGACTACACTGGATTGTGTTTGATAGTGTCTCGAATTTCAAAGTTGATGGTGGTGGCACATTCAATGGCAATGGGAAAATATGGTGGCAAAACTCATGCAAAACCAACACAAACCTTCCATGCAAAGATGGACCAACTGCCGTGACTTTTAATGAATGCAACAATTTGAGAGTGGCAAACCTGAGGTTCAAAGATGCACAACAAATGCATGTAATCTTTCAAAGATGCTTCAATGTTATTGTCTCGAATCTCGTCGTTAAAGCACCAGGGGACAGCCCTAACACTGATGGAATTCATGTCTCAGAAACACACAATATTCAAATAAGCAACAGTGACATTGGGACAGGTGATGACTGTATTTCAATAGTGAGTGGGTCCCAGAATGTTAGAGTTACAGATATTACCTGTGGACCAGGACATGGAATCAGCATTGGTAGCCTAGGAGCTGATAACTCAGAAGCTGAAGTGTCCAATGTGGTAGTGAATAGAGCCACCTTAAGAGGAACAAGTAATGGAGTTAGAATAAAGACTTGGCAGGGAGGTCATGGTTATGCAAGAAACATCAAATTTATGAATATAGTAATGCAAAACGTGACAAATCCTATAATCATAGATCAATATTACTGTGATCAAGAAGTGCCATGCCAAGAGCAGGTCTCGGGGGTGCAATTAAGCAAAGTTTTGTACCAAAACATAAGAGGAACTAGTGCCTCAGAAGTGGCTATAAAATTTGAGTGCAGCAAAAGTGTTCCTTGCAGAGAAATCTATGTGGAAGATGTAATTTTAGAAGCAGAAAGTGGTAGTGGAGGCACCATAGCTACATGTGAAAATGTTAGATATGTCAATAGAGGAAAGTTTTTTCCTCAATGCTCTCCTTCATTCAAATAA 1323 0.4014 MSPTRPIVSLFFILASLSSCFGYHIQEPLYQTSSDPMHDWRFNNAKHERFGFMTRADRATPRSSRPHGTVSVDDFGAKADGRDDTEAFEKAWNEACSRGAFLVVPENRIYFLKPITFSGPCQPNTAFMIYGTIKAWPVMSAYEQDRLHWIVFDSVSNFKVDGGGTFNGNGKIWWQNSCKTNTNLPCKDGPTAVTFNECNNLRVANLRFKDAQQMHVIFQRCFNVIVSNLVVKAPGDSPNTDGIHVSETHNIQISNSDIGTGDDCISIVSGSQNVRVTDITCGPGHGISIGSLGADNSEAEVSNVVVNRATLRGTSNGVRIKTWQGGHGYARNIKFMNIVMQNVTNPIIIDQYYCDQEVPCQEQVSGVQLSKVLYQNIRGTSASEVAIKFECSKSVPCREIYVEDVILEAESGSGGTIATCENVRYVNRGKFFPQCSPSFK 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal2g0026 440 PANTHER POLYGALACTURONASE 7 436 - -
Lal2g0026 440 Gene3D - 55 434 IPR012334 -
Lal2g0026 440 SUPERFAMILY Pectin lyase-like 64 436 IPR011050 -
Lal2g0026 440 MobiDBLite consensus disorder prediction 57 76 - -
Lal2g0026 440 Pfam Glycosyl hydrolases family 28 102 424 IPR000743 GO:0004650|GO:0005975
Lal2g0026 440 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 20 - -
Lal2g0026 440 ProSitePatterns Polygalacturonase active site. 278 291 IPR000743 GO:0004650|GO:0005975
Lal2g0026 440 SMART pbh1 221 247 IPR006626 -
Lal2g0026 440 SMART pbh1 330 351 IPR006626 -
Lal2g0026 440 SMART pbh1 301 322 IPR006626 -
Lal2g0026 440 SMART pbh1 248 269 IPR006626 -
Lal2g0026 440 SMART pbh1 271 291 IPR006626 -
Lal2g0026 440 PANTHER - 7 436 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal2g0026 Lal-Chr2 174394 176541 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal2g0026 2 174394 176541 Lal20g0658 20 6121626 6125354 PCT
Lal2g0026 2 174394 176541 Lal1g1503 1 17122701 17126444 PCT