Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal25g0603 ATGGGAACAGAAAGCCCCACGAATTATTCATACATACCTCACAATTTCAGCGACGATTCTTCTTCTTCCGCTTTCAGTGATTGCAATAGCGACCGTTCTGGCGAGTTCCAAACCGCTCCTTCTCAAACCCGACGCTTCCTCATCGCCTGCGCCACCGAAAACTCCGACGATCTTATTCATCAACTTGTTCATGATCTCACTTCATGTTCCATCGATGAACAAAAACAAGCCGCTATGGAAATTCGATTACTCGCGAAAAATAAGCCTGAAAATCGCGTTAAAATCGCTAAAGCTGGTGCTATTAAGCCTTTAATCTCTCTAATTTCATCACAAGATCTTCAGCTTCAAGAATATGGAGTCACCGCGATTTTGAATCTTTCACTATGCGATGAAAATAAAGAGGTTATAGCTTCTTCTGGAGCGGTTAAGCCTTTAGTGAAAGCTCTTAATACAGGGAATTCAACTGCGAAGGAAAACGCAGCGTGCGCTCTTCTTCGTCTCTCGCAATTGGAAGAGAACAAGGGTATAATCGGAAGATCAGGTGCTATTCCGTTATTAGTGAAACTTCTAGAAAACGGTGCGTTTCGGGGGAAGAAGGATGCGTGTACGGCTTTGTATTCGTTGTGTTCGGTTAAGGAGAATAAAGTTAGGGCTATAAAAGCAGGGATTATGAAAGTGCTTGTGGAGTTGATGGCGGATTTTGAATCGAATATGGTTGATAAGGCTGCTTACGTGGCGAGTTTGCTGGTGTCGGTGCCGGAGGCAAGGGCGGCGGTGGTGGGGGAAGGTGGGATTCCGGTGCTGGTGGAGATTGTGGAGGTTGGAACTCAGAGACAGAAGGAAATTGCGGTTTGTGACGAGAACGTTGCTTATCGGACTATGGTGGCGCGCGAAGGTGCGATTCCGCCGTTGATTGCTTTGTCTCAGTCAGGCACCGTTCGGGCAAAACAAAAGGTGGAGAAATTAATTGAGCTTCTGCGACAACCAAGATCCGGCAACCTCGCTGCACGTATGTCAGAAGTGTCATAA 1029 0.4645 MGTESPTNYSYIPHNFSDDSSSSAFSDCNSDRSGEFQTAPSQTRRFLIACATENSDDLIHQLVHDLTSCSIDEQKQAAMEIRLLAKNKPENRVKIAKAGAIKPLISLISSQDLQLQEYGVTAILNLSLCDENKEVIASSGAVKPLVKALNTGNSTAKENAACALLRLSQLEENKGIIGRSGAIPLLVKLLENGAFRGKKDACTALYSLCSVKENKVRAIKAGIMKVLVELMADFESNMVDKAAYVASLLVSVPEARAAVVGEGGIPVLVEIVEVGTQRQKEIAVCDENVAYRTMVAREGAIPPLIALSQSGTVRAKQKVEKLIELLRQPRSGNLAARMSEVS 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal25g0603 342 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 4-LIKE ISOFORM X1 1 335 - -
Lal25g0603 342 PANTHER U BOX DOMAIN-CONTAINING 1 335 - -
Lal25g0603 342 MobiDBLite consensus disorder prediction 1 37 - -
Lal25g0603 342 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 140 182 IPR000225 GO:0005515
Lal25g0603 342 Gene3D - 198 340 IPR011989 -
Lal25g0603 342 SMART arm_5 170 210 IPR000225 GO:0005515
Lal25g0603 342 SMART arm_5 252 291 IPR000225 GO:0005515
Lal25g0603 342 SMART arm_5 88 128 IPR000225 GO:0005515
Lal25g0603 342 SMART arm_5 129 169 IPR000225 GO:0005515
Lal25g0603 342 SMART arm_5 211 251 IPR000225 GO:0005515
Lal25g0603 342 Pfam Armadillo/beta-catenin-like repeat 89 127 IPR000225 GO:0005515
Lal25g0603 342 Pfam Armadillo/beta-catenin-like repeat 130 168 IPR000225 GO:0005515
Lal25g0603 342 Pfam Armadillo/beta-catenin-like repeat 172 210 IPR000225 GO:0005515
Lal25g0603 342 SUPERFAMILY ARM repeat 56 323 IPR016024 -
Lal25g0603 342 Coils Coil 153 173 - -
Lal25g0603 342 Gene3D - 38 196 IPR011989 -
Lal25g0603 342 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 99 141 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal25g0603 Lal-Chr25 4556643 4559343 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal25g0603 23 333 U-box Gene Family AT2G23140 46.177 7.19e-81 256
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal25g0603 25 4556643 4559343 Lal25g0603 25 4556643 4559343 ECH
Lal25g0603 25 4556643 4559343 Lal21g0234 21 1550475 1552251 PCT
Lal21g0234 21 1550475 1552251 Lal25g0603 25 4556643 4559343 PCT