Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal25g0597 ATGGCTTCAACTAGATCAAACACCTTCACCATGATCCTCCTCATTCTCACACTCTTAACCCTTTCATCAGCCATAGACATGTCCATAATCTCGTACGACAAAACTCACATGAACAAAAACGACAACGATGAACTCATGATCCTATATGAGGAGTGGTTAGTGAAAAATGGGAAGGTATATAACGGTCTAGGTGAGAAGGAAACCCGGTTCGAGATATTTAAAGATAATCTCCGGTTCATTAACGAACATAATAACGGTTTGAACCGGACCTATAAGCTTGGGTTGAACCGGTTCGCTGATCTGAGTAACGAGGAGTACAGAGAAAAGTTCCTTGGAACTAAGGTTGACCCTAATAGAAGGATGATTAAGTTGAGGACAAGGAGCAATCGTTATGCGCCACGTGTCGGTGATAAGTTGCCGGAGTCTGTTGATTGGAGGAAGGAAGGTGCTGTTGTCGGAGTCAAAGATCAAGGAAGCTGTGGGAGCTGTTGGGCATTCTCAACAATCGCTGCGGTGGAAGGAATAAACAAGATTGTGACCGGTAATCTGATCTCACTATCAGAACAAGAGCTTGTCGATTGTGATAGATCATACAATGAAGGATGCAATGGTGGACTTATGGATTATGGCTTTGAGTTCATCATCAACAATGGTGGCATTGACTCTGAAGAGGATTATCCCTATAAAGCAGTTGATGGTACTTGTGACCAATACAGGGAAAATGCTAAAGTTGTTACAATTGATGACTATGAAGATGTTCCTTCATATGATGAGAAAGCCTTACAAAAAGCTGTTGCAAATCAGCCTGTGGCTGTTGCTATTGAAGGAGGTGGCAGGGAATTCCAGTTATATGTTTCTGGTGTATTTACAGGGAGATGTGGAACTGCATTGGACCATGGTGTTAATGCTGTTGGTTATGGTACAGAAAATGGTAAAGACTATTGGATTGTGAGGAATTCATGGGGTCCTAGTTGGGGAGAAGATGGCTACATAAGACTTGAGCGCAATCTCGCAAGTAGCAGATCCGGGAAGTGTGGAATCGCAATTGAGCCATCTTATCCTGTTAAGACCGGCCAAAACCCCCCGAAACCGGGACCATCACCCCCTACACCTGTGAAACCACCATCTGTCTGTGACAATTACTATACTTGTCCTGAAAGCACTACTTGTTGCTGTATCTATGAGTATGCAAACACTTGCTTTGAGTGGGGATGTTGTCCTCTTGAGGGTGCTACCTGCTGTGAAGACCACTACAGTTGCTGTCCACATGACTATCCTATCTGCAACATTTATGCCGGAACTTGTCTACGGAGCATGAACAACCCATTTGGAGTGAAGGCATTGAAGCGAACTCCAGCTTTGCGCCGCAATTCAGTTGGAGGTGAGAACAAGATAAGCAATGCTTAA 1407 0.4399 MASTRSNTFTMILLILTLLTLSSAIDMSIISYDKTHMNKNDNDELMILYEEWLVKNGKVYNGLGEKETRFEIFKDNLRFINEHNNGLNRTYKLGLNRFADLSNEEYREKFLGTKVDPNRRMIKLRTRSNRYAPRVGDKLPESVDWRKEGAVVGVKDQGSCGSCWAFSTIAAVEGINKIVTGNLISLSEQELVDCDRSYNEGCNGGLMDYGFEFIINNGGIDSEEDYPYKAVDGTCDQYRENAKVVTIDDYEDVPSYDEKALQKAVANQPVAVAIEGGGREFQLYVSGVFTGRCGTALDHGVNAVGYGTENGKDYWIVRNSWGPSWGEDGYIRLERNLASSRSGKCGIAIEPSYPVKTGQNPPKPGPSPPTPVKPPSVCDNYYTCPESTTCCCIYEYANTCFEWGCCPLEGATCCEDHYSCCPHDYPICNIYAGTCLRSMNNPFGVKALKRTPALRRNSVGGENKISNA 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal25g0597 468 SMART GRAN_2 378 435 IPR000118 -
Lal25g0597 468 PRINTS Papain cysteine protease (C1) family signature 157 172 IPR000668 GO:0006508|GO:0008234
Lal25g0597 468 PRINTS Papain cysteine protease (C1) family signature 299 309 IPR000668 GO:0006508|GO:0008234
Lal25g0597 468 PRINTS Papain cysteine protease (C1) family signature 314 320 IPR000668 GO:0006508|GO:0008234
Lal25g0597 468 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 314 333 IPR025661 -
Lal25g0597 468 Pfam Granulin 389 436 IPR000118 -
Lal25g0597 468 Pfam Papain family cysteine protease 139 355 IPR000668 GO:0006508|GO:0008234
Lal25g0597 468 PANTHER CYSTEINE PROTEASE 34 384 - -
Lal25g0597 468 Pfam Cathepsin propeptide inhibitor domain (I29) 49 106 IPR013201 -
Lal25g0597 468 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 157 168 IPR000169 -
Lal25g0597 468 SUPERFAMILY Cysteine proteinases 42 355 IPR038765 -
Lal25g0597 468 Gene3D Granulin 375 438 IPR037277 -
Lal25g0597 468 SMART pept_c1 139 355 IPR000668 GO:0006508|GO:0008234
Lal25g0597 468 Gene3D Cysteine proteinases 27 357 - -
Lal25g0597 468 CDD Peptidase_C1A 140 354 IPR039417 -
Lal25g0597 468 SUPERFAMILY Granulin repeat 375 409 - -
Lal25g0597 468 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 297 307 IPR025660 -
Lal25g0597 468 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 34 384 - -
Lal25g0597 468 SMART Inhibitor_I29_2 49 106 IPR013201 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal25g0597 Lal-Chr25 4510527 4515859 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal25g0597 25 4510527 4515859 Lal16g1362 16 9994691 9997384 ECH
Lal25g0597 25 4510527 4515859 Lal13g0406 13 2540039 2543481 ECH
Lal25g0597 25 4510527 4515859 Lal12g0411 12 2915140 2918372 ECH
Lal25g0597 25 4510527 4515859 Lal25g0597 25 4510527 4515859 ECH
Lal8g0649 8 4584723 4588983 Lal25g0597 25 4510527 4515859 LSH
Lal25g0597 25 4510527 4515859 Lal10g0829 10 15922210 15926620 LSH