Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal25g0595 ATGGGAACCATGAAGGTGCATCAGTTCACACGTGAAGGATTATGGGAACACGAATCCCTCTCCTTCACACTTGGGTGCAAGCGCTTATGCACTCTTGCGCCTAAACATGCTAACACAGACGTTACTACTACTATTCCTACTCCTACTCCTTTCGATCTCAAGAGCTTCATCAAACCTGAAAGTGGGTCTAGAAAACTTGGGTCCTTGGATGATAATAAGAAAGATCCACCTTCACCAAAGGACCAGGTGGAAACACATTCAGGAGGGACTCGGTGGAATCCGACGCAAGAACAGATAGAGATATTAGAGATGTTTTATAAAGCTGGAACTCGAACTCCAAATATTCAGCAGATAGAGAATATCACTGTTCAGCTTAGCGAATATGGGAAGATAGAAGGGAAAAATGTATTCTATTGGTTTCAAAACCACAAAGCACGTGAAAGACAAAAGCGGAAGCGTAACAGTCTTAGTCTTGCTCTTAGTCCTCCAACTCCTACCTTTACTACCAGTATTACTTTTGAGACAAGGGGGGGAATAGATCAAGAAGATAGTCCATGCAAGTGTAGGAGCTGGGCATTTGAGTACTTGGAAGACCAAAGCTGGGCATCCTGCAAAGATTTGGATCACAAAACTCTGGAGCTTTTCCCATTGCACCCGGAATTAGGCAGAAGCAGATAA 678 0.4366 MGTMKVHQFTREGLWEHESLSFTLGCKRLCTLAPKHANTDVTTTIPTPTPFDLKSFIKPESGSRKLGSLDDNKKDPPSPKDQVETHSGGTRWNPTQEQIEILEMFYKAGTRTPNIQQIENITVQLSEYGKIEGKNVFYWFQNHKARERQKRKRNSLSLALSPPTPTFTTSITFETRGGIDQEDSPCKCRSWAFEYLEDQSWASCKDLDHKTLELFPLHPELGRSR 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal25g0595 225 CDD homeodomain 90 151 IPR001356 GO:0003677
Lal25g0595 225 MobiDBLite consensus disorder prediction 39 94 - -
Lal25g0595 225 MobiDBLite consensus disorder prediction 64 81 - -
Lal25g0595 225 SMART HOX_1 87 154 IPR001356 GO:0003677
Lal25g0595 225 Gene3D - 89 157 - -
Lal25g0595 225 Pfam Homeodomain 90 149 IPR001356 GO:0003677
Lal25g0595 225 PANTHER WUSCHEL-RELATED HOMEOBOX 4 4 220 IPR044186 GO:0003700|GO:0010067|GO:0010087|GO:0051301
Lal25g0595 225 ProSiteProfiles 'Homeobox' domain profile. 85 150 IPR001356 GO:0003677
Lal25g0595 225 SUPERFAMILY Homeodomain-like 86 155 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal25g0595 Lal-Chr25 4473831 4476874 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal25g0595 4 176 Wox Gene Family AT1G46480 54.545 3.11e-54 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Lal25g0595 Homeodomain 1.5e-18 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal25g0595 25 4473831 4476874 Lal25g0595 25 4473831 4476874 ECH
Lal8g0642 8 4511154 4513347 Lal25g0595 25 4473831 4476874 LSH