Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal25g0591 ATGGCGCAGATTCAGAGTCCTGTATCGGGTCCTCCTCCGCAAAACGGCGTCGTTCCTGGTGCTCCGAACGTGAGCTTCGTGACGACGTCGTTGTACGTTGGAGATCTTGACTTTAACGTTAACGATTCTCAGCTCTACGATCTGTTCAGCCAGATTGGACAAGTCGTTTCGGTTAGGGTGTGTCGTAACATAACCACACATCAATCACTCGGTTACGGTTATGTTAACTACAGTAACCCTCACGATGCTGCAAGAGCATTGGATGTGCTGAATTTTACTCCACTGAATAACAAATTTATTAGAGTTATGTACTCTCATAGAGATCCTAGTATTCGCAAGAGTGCTACTGCTAATATTTTTATCAAGAATTTGGACGAGGCAATTGATCACAAAGGACTGCATGATACCTTTTCTGCCTTTGGACATATTCTTTCATGCAAAATAGCAACTGATGCTTCTGGCCAGTCTAAAGGCTATGGTTTTGTTCAATTCGATAGCGAAGAGGCTGCACAGAATGCTATTGATAAGTTGAATGGCATGCTGTTGAATGATAAGCAGGTGTATGTAGGTCATTTCCTACGGAAGCAAGATAGAGACAATGCCCTCATTAAGACAAAATTCACTAATGTCTACGTGAAAAACCTATCAGATTCAATGATGGATGATGACCTGAAGAAATTTTTTGGAAAATATGGGACCATTACTAGTGCTGTCGTAATGAGAGATGGTAATGGGAAATCGAAGTGTTTCGGTTTTGTCAACTTTGAAAACCCAGATGATGCCGCTAAAGCTGTTGAGGCACTCAATGGGAAAAAAATTGATGACAAGGAGTGGTATGTTGGGAAAGCCCAGAAAAAATCTGAAAGAGAGCAAGAACTCAAAGGACGTTTTGAGCAAAGTGTAAAAGAGGTCGTTGACAAATATCAAGGTCTGAACTTGTATCTCAAGAACTTGGATGATACCATCAGTGATGAAAAGCTGAAAGAACTGTTCTCCGAGTTTGGTACAATTACTTCATACAAAGTTATGCGTGACCCAAGTGGAGCCAGTAGAGGATCAGGATTTGTTGCATTTTCAACTCCTGAGGAAGCTTCTCGAGCTGTTGCGGAGATGAATAGTAAAATGATTGCTGGAAAACCTCTATATGTTGCCCTTGCACAGAGAAAGGAAGAGAGAAGAGCAAGATTACAGGCACAATTTTCTCAAATGAGGCCTATTGCAATTACTCCTTCTGTTGCACCTCGTATGCAACTCTTTCCTCCTGGTGCTCCTGGTTTAGGACAACAATTTTTGTATGGGCAAGGACCCCCAGCCATGATTCCTCAACAAGCTGGATTTGGTTACCAGCATCAGCTTGTTCCTGGGACGAGGCCTGGCAGTGGTCCAATGCCGAGATTCTTTTTACCAATGGTTCAACAGGGCAAGCAAGGTCCTGTGCAACAATCCCAGCAGCAGATGGTTCCAAGGGGACGTGTCTACGGTTACCCTCCTGGTCGCAACTTGCAAGATGTCCCACTGACAGGACTTCTGCCAACCGGCGATGCTGTGGAGCAGCCAATGCCCATTCAGGCCTTGGCTACAGCTCTTGCAAATGCTCCTCCTGAACAGCAGAGGACTATGCTTGGTGAGGCTTTGTACCCGCTCGTAGATCAGCTGGAACACGATGCAGCAGCTAAGGTTACAGGCATGCTTTTGGAGATGGACCAACCTGAGGTATTGCACCTGATTGAGTCGCCAGATGATCTGAAGGCTAAAGTTGCTGAGGCCATGGATGTGTTGAGAATTGTTAACACACCGGGCGTTCGACTAGCCTCGCTCTCTCTTGATGACAATCTTGTGTCTTAG 1845 0.4493 MAQIQSPVSGPPPQNGVVPGAPNVSFVTTSLYVGDLDFNVNDSQLYDLFSQIGQVVSVRVCRNITTHQSLGYGYVNYSNPHDAARALDVLNFTPLNNKFIRVMYSHRDPSIRKSATANIFIKNLDEAIDHKGLHDTFSAFGHILSCKIATDASGQSKGYGFVQFDSEEAAQNAIDKLNGMLLNDKQVYVGHFLRKQDRDNALIKTKFTNVYVKNLSDSMMDDDLKKFFGKYGTITSAVVMRDGNGKSKCFGFVNFENPDDAAKAVEALNGKKIDDKEWYVGKAQKKSEREQELKGRFEQSVKEVVDKYQGLNLYLKNLDDTISDEKLKELFSEFGTITSYKVMRDPSGASRGSGFVAFSTPEEASRAVAEMNSKMIAGKPLYVALAQRKEERRARLQAQFSQMRPIAITPSVAPRMQLFPPGAPGLGQQFLYGQGPPAMIPQQAGFGYQHQLVPGTRPGSGPMPRFFLPMVQQGKQGPVQQSQQQMVPRGRVYGYPPGRNLQDVPLTGLLPTGDAVEQPMPIQALATALANAPPEQQRTMLGEALYPLVDQLEHDAAAKVTGMLLEMDQPEVLHLIESPDDLKAKVAEAMDVLRIVNTPGVRLASLSLDDNLVS 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal25g0591 614 Gene3D - 9 116 IPR012677 -
Lal25g0591 614 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 521 598 IPR002004 GO:0003723
Lal25g0591 614 SMART poly_2 533 596 IPR002004 GO:0003723
Lal25g0591 614 Gene3D - 206 307 IPR012677 -
Lal25g0591 614 SUPERFAMILY PABC (PABP) domain 477 595 IPR036053 GO:0003723
Lal25g0591 614 SUPERFAMILY RNA-binding domain, RBD 208 392 IPR035979 GO:0003676
Lal25g0591 614 SUPERFAMILY RNA-binding domain, RBD 29 198 IPR035979 GO:0003676
Lal25g0591 614 CDD RRM4_I_PABPs 310 388 - -
Lal25g0591 614 Gene3D - 309 409 IPR012677 -
Lal25g0591 614 Pfam Poly-adenylate binding protein, unique domain 529 593 IPR002004 GO:0003723
Lal25g0591 614 SMART rrm1_1 118 190 IPR000504 GO:0003723
Lal25g0591 614 SMART rrm1_1 312 384 IPR000504 GO:0003723
Lal25g0591 614 SMART rrm1_1 30 103 IPR000504 GO:0003723
Lal25g0591 614 SMART rrm1_1 209 281 IPR000504 GO:0003723
Lal25g0591 614 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 29 107 IPR000504 GO:0003723
Lal25g0591 614 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 117 194 IPR000504 GO:0003723
Lal25g0591 614 CDD RRM1_I_PABPs 30 109 - -
Lal25g0591 614 CDD RRM2_I_PABPs 117 191 IPR045305 -
Lal25g0591 614 Gene3D - 517 596 - -
Lal25g0591 614 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 208 285 IPR000504 GO:0003723
Lal25g0591 614 PANTHER RNA BINDING PROTEIN 18 601 - -
Lal25g0591 614 PANTHER POLYADENYLATE-BINDING PROTEIN 18 601 - -
Lal25g0591 614 CDD RRM3_I_PABPs 207 286 - -
Lal25g0591 614 SMART rrm2_1 209 281 IPR003954 GO:0003676
Lal25g0591 614 SMART rrm2_1 312 384 IPR003954 GO:0003676
Lal25g0591 614 SMART rrm2_1 30 103 IPR003954 GO:0003676
Lal25g0591 614 SMART rrm2_1 118 190 IPR003954 GO:0003676
Lal25g0591 614 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 210 278 IPR000504 GO:0003723
Lal25g0591 614 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 313 381 IPR000504 GO:0003723
Lal25g0591 614 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 119 187 IPR000504 GO:0003723
Lal25g0591 614 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 31 101 IPR000504 GO:0003723
Lal25g0591 614 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 311 388 IPR000504 GO:0003723
Lal25g0591 614 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 30 594 IPR006515 GO:0003723
Lal25g0591 614 Gene3D - 117 205 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal25g0591 Lal-Chr25 4421474 4426515 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal25g0591 1 608 Eukaryotic Initiation Factors Gene Family AT4G34110 65.403 0.0 822
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal25g0591 25 4421474 4426515 Lal25g0591 25 4421474 4426515 ECH
Lal8g0641 8 4502340 4508398 Lal25g0591 25 4421474 4426515 LSH
Lal25g0591 25 4421474 4426515 Lal10g0821 10 15871794 15876720 LSH