Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal25g0589 ATGCAAGGGCAAAGAAGTACGGTTGGTTCCTTGCCTGAAACCTTAGAATTTGATTGTGGATCTACATCGAGTAACACTACAGTTAATCCGCCAATTTTCTGGAATAATATGCAGAATCCGGCAGAAAACCATATACCTGAATATATACTTTCCCCTAGTGAGATTAACTCATCTTATGTAAATTATATAAACCAGGACTGGCAGAACTTGAGTGGATGGAGCTTAGGTGAGCCAAGTTCAAGTAATACACAGAATGAGGTTAACAATGAGCAGAAAAGAGAACTAGGATGGTCATCTTCGGTTAGTGCTAGTGCAATAGGTGGTCCAATACTAGACAGGTGCCTTAGACCAGCCAATGCTCTTTCTCTGGACAATGTCATTACAAGTTATATACCTATGCACAGCTCCAATTCTCATTTGGTGTCCCAGAGTCTTAACTTAAATGCAAGCTTAGCAGATAGTGGCAGCGGTAATAGCCATCATATGGAACATCCTAACTTGCCCAAGTCTAGTGGACCACTAAATGAGCATATTCCACCTATTACTAGTTCTGGTTCTTTTACGCTTCCTTCTGGAAGTAACGGCTTTTTGGTTGAGGATAATGATGGTAGGCCAGGTTGTTCTCGAGACACTCGCCGTGTATCTGGTAAAAGAAAGGCTGTTGAACGAGACTTTGGACAATCTTTGGATGTTGGAAGTTGTAGCTACAGTCAGAATAGAGATGGTAGTGCTTGGAACACATTTCCTACTCAGAATTATGCAGGGAACAATTTTAGCAGATCTGCTTCAGTGGAACTGGTAAACGCAAGAATTGGCCTGAGCATGGGTAATGTTGCCTCTGAAAGTGTTCCTGATACAAATGTTGCAGAACTCAGAAATTGTCGTTTGAGGATAAATCCTCCTAGCCAGCAAAATTCCATTGCTCCCACTGCATTCTCAAGTGGAAGTGTGATTAGGAATACTGGTATTTCTTCGTCCACTTCAATGTTGCAAAGGATTCATCGTCATGATAGTTCTCTGGACTTTAGGTCAGTACCACCGGTGGATACTATAATTCCTCATAGCCAGCCCCTTATAGTTCATGCTCCTGCTTTACCAAGGAATGCACAATCATTTAGGTGGAGTAGCGGTTCTACCTCAACAAACAACCTTTCATCAAACTCACTTATGAGTGCAAATAGGGATAATCTACCACACGAGGAAGGTAGCTCAAGAAGTATGCCTAGAAACATTCCAGAACAACCAGTATTTGTGCCTCCAACCAATTTAAGAAATTTGGTTCGGAATCCAGCAATTAGAGCTTCAAGTAGTGCAAATTTAAGTATTCCAGGAAATGTCGCTTCATCACGGCCTGGGTCAAATTCAGCTATCAATCCATCATCTGCCTCTCCGTGGGCTTCCCGGCCTAACCCTCACCAGCATTATCCACGCAGATTAGCTGAATATGTTCGCCAGCCCTTGTTTTCTCCTGGTTCTGAGGCTGCTGGAAGTCCAATCAACAGCTATTCTTCCTTACGCGGTCCTCCTACATCTTATATGCTGTCATCTGGGGTGGTACACCCCGGATCAGCTTCATTGTCGGAGAGGCCAGGTGATAGTCAATATGCAATTCCTCCTTCATTACGACCGTTGGCTGTTGCTGGTGAAGGAAGTGGTAGAATTGTATCCGAGCTCCGCAATGTGTTGGGCCTCATGCGTAGGGGTGGGAGCCTGCGACTCGAGAATGTTGCTTGGAATCCAATAAATTTTAAGGATGTTATGATGCTCAACCAGTCAATGTTTCCTGGAATAGCTGATATTCATGATCGACACAGGGATATGCGACTTGATGTTGATAACATGTCTTATGAGGAGTTATTGGCTTTGGAAGAGCGCATTGGAAATGTAAGTACTGGGTTGAATGAGGATACCATATCGAAACATTTGAAACAGAAGAAGTATTCAGTTGAAAAAGGTTCTCAGCACGAGGCGGAACCGTGTTGTATTTGTCAGGAGGAGTATAAGGATGGAGACAATATGGGATCATTGGATTGCGGGCACGATTTCCATTCTGACTGTGTTAAACAATGGCTAACACATAAGAATCTCTGTCCCATTTGTAAGACAGCAGGCTTGGCAACATGA 2124 0.4331 MQGQRSTVGSLPETLEFDCGSTSSNTTVNPPIFWNNMQNPAENHIPEYILSPSEINSSYVNYINQDWQNLSGWSLGEPSSSNTQNEVNNEQKRELGWSSSVSASAIGGPILDRCLRPANALSLDNVITSYIPMHSSNSHLVSQSLNLNASLADSGSGNSHHMEHPNLPKSSGPLNEHIPPITSSGSFTLPSGSNGFLVEDNDGRPGCSRDTRRVSGKRKAVERDFGQSLDVGSCSYSQNRDGSAWNTFPTQNYAGNNFSRSASVELVNARIGLSMGNVASESVPDTNVAELRNCRLRINPPSQQNSIAPTAFSSGSVIRNTGISSSTSMLQRIHRHDSSLDFRSVPPVDTIIPHSQPLIVHAPALPRNAQSFRWSSGSTSTNNLSSNSLMSANRDNLPHEEGSSRSMPRNIPEQPVFVPPTNLRNLVRNPAIRASSSANLSIPGNVASSRPGSNSAINPSSASPWASRPNPHQHYPRRLAEYVRQPLFSPGSEAAGSPINSYSSLRGPPTSYMLSSGVVHPGSASLSERPGDSQYAIPPSLRPLAVAGEGSGRIVSELRNVLGLMRRGGSLRLENVAWNPINFKDVMMLNQSMFPGIADIHDRHRDMRLDVDNMSYEELLALEERIGNVSTGLNEDTISKHLKQKKYSVEKGSQHEAEPCCICQEEYKDGDNMGSLDCGHDFHSDCVKQWLTHKNLCPICKTAGLAT 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal25g0589 707 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MBR2-LIKE ISOFORM X1 1 706 - -
Lal25g0589 707 MobiDBLite consensus disorder prediction 371 422 - -
Lal25g0589 707 CDD RING-H2_TTC3 659 701 - -
Lal25g0589 707 ProSiteProfiles Zinc finger RING-type profile. 660 701 IPR001841 -
Lal25g0589 707 MobiDBLite consensus disorder prediction 151 221 - -
Lal25g0589 707 MobiDBLite consensus disorder prediction 176 195 - -
Lal25g0589 707 MobiDBLite consensus disorder prediction 1 23 - -
Lal25g0589 707 MobiDBLite consensus disorder prediction 371 394 - -
Lal25g0589 707 MobiDBLite consensus disorder prediction 74 95 - -
Lal25g0589 707 SMART ring_2 660 700 IPR001841 -
Lal25g0589 707 MobiDBLite consensus disorder prediction 151 165 - -
Lal25g0589 707 MobiDBLite consensus disorder prediction 440 468 - -
Lal25g0589 707 MobiDBLite consensus disorder prediction 440 473 - -
Lal25g0589 707 SUPERFAMILY RING/U-box 647 702 - -
Lal25g0589 707 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 1 706 IPR045191 GO:0061630
Lal25g0589 707 MobiDBLite consensus disorder prediction 203 221 - -
Lal25g0589 707 Pfam Ring finger domain 660 701 IPR001841 -
Lal25g0589 707 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 623 704 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal25g0589 Lal-Chr25 4394193 4401110 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal25g0589 256 707 C3H Transcription Factor Family AT2G15530 36.864 3.09e-66 230
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal25g0589 25 4394193 4401110 Lal25g0589 25 4394193 4401110 ECH
Lal8g0639 8 4482406 4489343 Lal25g0589 25 4394193 4401110 LSH
Lal25g0589 25 4394193 4401110 Lal10g0820 10 15860942 15867302 LSH
Lal25g0589 25 4394193 4401110 Lal21g0198 21 1311167 1316663 PCT
Lal21g0198 21 1311167 1316663 Lal25g0589 25 4394193 4401110 PCT