LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal25g0588	ATGGCTCTTGTTATAGACAATTGTGAAGACCTTTTACTCTCTATAGACTCTTACAAATCAGTGCCTGCACCATTCCTCACCAAGACATATCAATTGGTTGATGACCCTAACACCAACCACATAGTCTCTTGGGGTGAAAACGACACCACCTTCGTCGTTTGGCGTCCTCCTCACTTTGCTAGACACGTTCTCTCTAACTATTTCAAGCACAACAATTTCTCAAGCTTCGTTCGCCAACTCAATACCTATGGTTTTAGAAAGATTGTGCCAGATAGATGGGAGTTTGCAAACGAATTCTTCAAGAAAGGAGAGAAACACTTATTGTGTGAGATTCATAGAAGAAAAACAACACACCCTCAACAAATAACCATGAACCATAATCACCATTTTTCTTCTCCATTGGGAATCAACAACGTTCCAAGTTTCTTTCCCTTTCATGACCGAGTCAGCATATCTCCTCCTACTGACTCAGTCGAGTTACCAATCTGGTGTGACTCACCTCCACCCACTTCCCTAACAAATGAAGGAAACAACTACAACAATTCAGTCACTGCACTTTCTGAAGACAACGAAAGACTTAGGAGAACCAACAACATACTCTTATCAGAACTCACACACATGAAGAAACTCTACAATGATATAATCTACTTTGTTCAAAACCATGTTAAGCCTGTTTCTCCAAACAATAATACTTATCATTCAGCTTCAATAACGATGCAAAGGCAAATGAATAAACAGGTTAAAGGGTGTTACTATAATTATTATTCAACTAATCCTATGCAAAATTCTCCGAGTAACACATCAAGGAGCTCCATTACAATTGTTGAAAAACCTGGTGGTAGTAACAGCTGCAAGACTAAGCTTTTTGGGGTATCACTTCAATCCAAGAAAAGGGTGTGCTCTGAGTATGGATCCAATAATCTTATGGATTATTCTGAAATTAATTATAAGTCTCGTTTGGTGTTGGAAAATGATGATGTCTTAAGCTTGAAACTCATGCCTCCTAATCCCACTTGTTAA	1020	0.3863	MALVIDNCEDLLLSIDSYKSVPAPFLTKTYQLVDDPNTNHIVSWGENDTTFVVWRPPHFARHVLSNYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANEFFKKGEKHLLCEIHRRKTTHPQQITMNHNHHFSSPLGINNVPSFFPFHDRVSISPPTDSVELPIWCDSPPPTSLTNEGNNYNNSVTALSEDNERLRRTNNILLSELTHMKKLYNDIIYFVQNHVKPVSPNNNTYHSASITMQRQMNKQVKGCYYNYYSTNPMQNSPSNTSRSSITIVEKPGGSNSCKTKLFGVSLQSKKRVCSEYGSNNLMDYSEINYKSRLVLENDDVLSLKLMPPNPTC	339

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lal25g0588	339	SUPERFAMILY	"Winged helix" DNA-binding domain	22	114	IPR036390	-
	Lal25g0588	339	Pfam	HSF-type DNA-binding	25	114	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Lal25g0588	339	Gene3D	-	17	116	IPR036388	-
	Lal25g0588	339	PANTHER	BNAC06G00310D PROTEIN	12	333	-	-
	Lal25g0588	339	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	12	333	IPR027725	-
	Lal25g0588	339	ProSitePatterns	HSF-type DNA-binding domain signature.	64	88	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Lal25g0588	339	Coils	Coil	183	203	-	-
	Lal25g0588	339	PRINTS	Heat shock factor (HSF) domain signature	25	48	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Lal25g0588	339	PRINTS	Heat shock factor (HSF) domain signature	63	75	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Lal25g0588	339	PRINTS	Heat shock factor (HSF) domain signature	76	88	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Lal25g0588	339	SMART	hsfneu3	21	114	IPR000232	GO:0003700\|GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal25g0588	Lal-Chr25	4373107	4375554	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lal25g0588	1	333	HSF	AT1G46264	53.090	1.72e-111	326

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Lal25g0588		HSF_DNA-bind	9.4e-32	CL0123

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lal25g0588	25	4373107	4375554	Lal25g0588	25	4373107	4375554	ECH
	Lal8g0638	8	4467319	4468959	Lal25g0588	25	4373107	4375554	LSH
	Lal25g0588	25	4373107	4375554	Lal21g0195	21	1285385	1288001	PCT
	Lal21g0195	21	1285385	1288001	Lal25g0588	25	4373107	4375554	PCT