Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal25g0572 ATGCAACAATCAAACGGCTCTGATTCTTCCCCACAACAACAACAACCGCCACAGTCGGAGCAGAAACAACAACAACAACAACAACCGCACCATCGGCAACCGCCACCGCCTCAGCAGTGGGTTCCGATGCAGTACCCGGCTATGGTAATGCCACACCACTTGTTACCGCGTCAACATTACGCGCCGCCGCCACCTTACGTGGCTTACCATCCTCATCACCAGTACCAGCACGTGCCTCCGTCTCCTCATCAGAATCATGGATCCAATGGCGGCGAGAACAAGACCGTGTGGGTTGGTGATTTGTATCACTGGATGGATGAAAACTATCTCCATCGCTGTTTCGCTTCCATCGGCGAGATTTCCTCCATCAAGGTTATTCGCAATAAGCATACTGGTCTTTCAGAGGGTTATGGATTTGTGGAATTTGGTTTACATGCCACAGCTGAGAAAGTTTTACAGACTTATGCTGGAATTTTGATGCCCAATACAGAGCAACCTTTCCGCCTGAACTGGGCGACATTTAGCACGGGAGACAAGGGTTCAGATAATGTTCCCGATTTTTCTATTTTTGTAGGAGATTTAGCTTCAGATGTTACCGATAGCTTATTGCATGAAACATTTTCTGCTAAGTATCCTTCTGTTAAAGCTGCAAAAGTTGTTTTTGATGTCAATACTGGCCGTTCAAAGGGCTATGGTTTTGTTAGATTTGGAGATGATAATGAGAGGAACCAGGCTATGACTGAAATGAATGGTGTTTACTGTTCTAGCAGGCCTATGCGTATTGGTGCTGCAACTCCAAGAAAATCATCTGGCTATCAACAAGGAGGCCAGTCAAATGGTGCATCCAATATATCAGAAACGGATTCTACGAACACAACTATATTTGTTGGAGGACTTGACCCAAATGTTACAGATGAAGATCTTAGGCATTCATTCTCCCAGTATGGTGAGATAGTTTCTGTTAAGATACCTGTTGGAAAGGGATGTGGTTTTGTCCAATTTGTTAACAGAAATAATGCTGAAGAAGCCTTGCAGAAGCTAAATGGTACAACGATTGGCAAGCAAACACAGTTTAGGATGGACTTCGGCAGCCCCTGGAATGGGGGTTATTATGGGGCCCCTGTTTATGATGGTTATGGGTATGCTTTGCCGCCGCCTCATGACCCAAGAACATATGCTGCTGCTTATGGGGCTTACCCTGTTTATCGTGGCCACCAACAGCAAGTAAGCTGA 1233 0.4566 MQQSNGSDSSPQQQQPPQSEQKQQQQQQPHHRQPPPPQQWVPMQYPAMVMPHHLLPRQHYAPPPPYVAYHPHHQYQHVPPSPHQNHGSNGGENKTVWVGDLYHWMDENYLHRCFASIGEISSIKVIRNKHTGLSEGYGFVEFGLHATAEKVLQTYAGILMPNTEQPFRLNWATFSTGDKGSDNVPDFSIFVGDLASDVTDSLLHETFSAKYPSVKAAKVVFDVNTGRSKGYGFVRFGDDNERNQAMTEMNGVYCSSRPMRIGAATPRKSSGYQQGGQSNGASNISETDSTNTTIFVGGLDPNVTDEDLRHSFSQYGEIVSVKIPVGKGCGFVQFVNRNNAEEALQKLNGTTIGKQTQFRMDFGSPWNGGYYGAPVYDGYGYALPPPHDPRTYAAAYGAYPVYRGHQQQVS 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal25g0572 410 CDD RRM3_NGR1_NAM8_like 291 356 - -
Lal25g0572 410 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 294 355 IPR000504 GO:0003723
Lal25g0572 410 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 96 163 IPR000504 GO:0003723
Lal25g0572 410 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 189 258 IPR000504 GO:0003723
Lal25g0572 410 Gene3D - 263 357 IPR012677 -
Lal25g0572 410 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 94 174 IPR000504 GO:0003723
Lal25g0572 410 MobiDBLite consensus disorder prediction 264 289 - -
Lal25g0572 410 SMART rrm1_1 293 361 IPR000504 GO:0003723
Lal25g0572 410 SMART rrm1_1 188 262 IPR000504 GO:0003723
Lal25g0572 410 SMART rrm1_1 95 170 IPR000504 GO:0003723
Lal25g0572 410 MobiDBLite consensus disorder prediction 267 289 - -
Lal25g0572 410 MobiDBLite consensus disorder prediction 1 42 - -
Lal25g0572 410 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 292 365 IPR000504 GO:0003723
Lal25g0572 410 SUPERFAMILY RNA-binding domain, RBD 61 175 IPR035979 GO:0003676
Lal25g0572 410 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 187 266 IPR000504 GO:0003723
Lal25g0572 410 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 32 409 - -
Lal25g0572 410 PANTHER POLYADENYLATE-BINDING PROTEIN RBP47C-RELATED 32 409 - -
Lal25g0572 410 MobiDBLite consensus disorder prediction 63 92 - -
Lal25g0572 410 SUPERFAMILY RNA-binding domain, RBD 185 356 IPR035979 GO:0003676
Lal25g0572 410 MobiDBLite consensus disorder prediction 78 92 - -
Lal25g0572 410 CDD RRM2_SECp43_like 186 265 - -
Lal25g0572 410 Gene3D - 186 262 IPR012677 -
Lal25g0572 410 MobiDBLite consensus disorder prediction 1 29 - -
Lal25g0572 410 CDD RRM1_SECp43_like 95 175 - -
Lal25g0572 410 Gene3D - 93 173 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal25g0572 Lal-Chr25 4273467 4277212 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal25g0572 188 358 Eukaryotic Initiation Factors Gene Family AT2G23350 31.250 9.16e-17 80.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal25g0572 25 4273467 4277212 Lal25g0572 25 4273467 4277212 ECH
Lal8g0617 8 4300329 4304337 Lal25g0572 25 4273467 4277212 LSH
Lal25g0572 25 4273467 4277212 Lal10g0801 10 15723276 15727120 LSH