Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal25g0568 ATGGATGGACAAAGCTGCGAAAGATGCAAATCATGGGTGGACGACATTTACTGGTCCCATTTTCAAGTCATCCATTTTGCTCAAATTCTCCCCAACGGTTATGATCAGCACCTTGCACTTCCCAAAACATTTTCGAATAATTTGAAGGAAAAGTTGCCAGAAAATGTGGGCCTTAGAGGTCCTTGTGGCACTGTGTGGACAGTAGGATTGACAACAAGAGATGGTGCCTTGTACTTCACACATGGCTGGCAACAATTTGTGAAAGTCCACTCTTTTAAAGAGAATGATTTGCTGGTGTTTAAGTACAATGGTGGTGAATCACTGTTTGATGTTTTGATATTTGATGGGGAGAGCTTCTGTGAAAAGGTGGATTCTTACTTTGTTCGAAAATGTGAGCATACTGAAAATGGGGTTGGAAGTTTAAGCAAGAGAAGAGACACAGATGATTGTGTGAATGAAGTTAATACCCCTTCTAATGCTGGTGTCGAATGTACTGCACCTGACAAATCTGTACACAATAATGGTTTCGTAGTGCCAGCAGCTGTACCCTTTGAAGCTCCTAGTAGTGAAGGGACTATTAATGCTGGTGTTGAATCTGCTTCCCCCGAGCAATTTATGCATGCTAATGGAGACACAATGCCAACATCTGTTCCTTCTCAAACTACTGACACAAGGGTCAGGAGTATAGTTTCTGCTGCTACGCATGTCCAAGCTAAGCAAAGAGGAAGACCTCCAAAAGTATCTAGTGCTCATCAGGGAGTGGTTGACACTGATAATCGTGTGGAAGAAGTTAATACCCTTTCTAATGCTGGTTTGCAGTATGCCGCACTTGAGAAATCCGTGCATAATAACAGTGTCATAGTGCCAGCACCTGCACCCTTCGAAGCTCTTAGTAGTGAAAGGACTACTCACAAAACAGCCAGGAAGCTAGTTTCTGCTGTTACACATGCCCAGACTAAGCAAAGAGGAAAACCTCCAAAAGTATCTAATGCTCCTCAGGGAGTGGTTGAGACTGATAATTGTGTGGAAGAAGTTAATACCCCTTCCAATGCTGGTGTGGACTGTGCTGCACTTGAGAAATCTGTGCATCATAACATTGTAGTGCCAGTCTCTGTACCCTTCAAAAGTCCTATTGGTGAAAGGACTTTTGATGCTGTTGTTGAATCTGCTAACCCTCAGCAATTCATACATGCTAATGCTGGTGTGGATAGTGCTGCAATTGAGAAATCTGTGCCCCATAACACTGTAGTGCCAGTTACTTTACCCTTCGGAACTCCTATTGGTGAAAGGACTTTTGATGCTGTTGTTGAATCTGCTTCTCCTCAGAAATTCATACAAGCGAATGGAGACATAGTGGCAACAGCTGATCCCTTGCAAACCACTGATAAAAGGTTCAAGATCAGGAAGCTAGTTTCTGCTGTTAAACATGTTCAGACTAAGGAAAGAGGAAGTCCTCCAAAAATATCTAGTTCTAGTCAAGGAGTACTTGACTGGGTGACCGATTCTGAGATTGATTCTGCTGGTCAAAGCAAGGAACACATTGAATTATACACCTCAAATAGAAGGCCTGTCACAGAACATGAGATAAATAATGCCCGACATTTGGCCCAAGCAGCATGTGCCAAGAAAAGCTTGTTGATAGTTATGCAACCTGAGCAAGTATACACAGGATTCTACTTGTCAATACCAAGTAGGTGGTTAGTAGAGCATCTCCCTCAACGATCTCAAGATCTTGTACTACGCGTCGATAAGACCGAATGGCATGTCAAATACTGCTACGACCGAACTCATTACACCGGAGAACTTACTCTTGGCTGGAGAAAATTTGCTCTTGATAATAACCTGGAAGAGTTTGATGCGTGTGTGTTTCAACCAATGGGCAAAGTCTATGGCACATGGCTCATTGATGTCAAAATTTTCAGAGTTGTTAAGGACATCACCCCGCCGACTATCCCTAAACCTCCTGCCAAAAGGGGCAGGAAAAGAGCAATCAGGAACATTCAGACAGAATAA 2013 0.4302 MDGQSCERCKSWVDDIYWSHFQVIHFAQILPNGYDQHLALPKTFSNNLKEKLPENVGLRGPCGTVWTVGLTTRDGALYFTHGWQQFVKVHSFKENDLLVFKYNGGESLFDVLIFDGESFCEKVDSYFVRKCEHTENGVGSLSKRRDTDDCVNEVNTPSNAGVECTAPDKSVHNNGFVVPAAVPFEAPSSEGTINAGVESASPEQFMHANGDTMPTSVPSQTTDTRVRSIVSAATHVQAKQRGRPPKVSSAHQGVVDTDNRVEEVNTLSNAGLQYAALEKSVHNNSVIVPAPAPFEALSSERTTHKTARKLVSAVTHAQTKQRGKPPKVSNAPQGVVETDNCVEEVNTPSNAGVDCAALEKSVHHNIVVPVSVPFKSPIGERTFDAVVESANPQQFIHANAGVDSAAIEKSVPHNTVVPVTLPFGTPIGERTFDAVVESASPQKFIQANGDIVATADPLQTTDKRFKIRKLVSAVKHVQTKERGSPPKISSSSQGVLDWVTDSEIDSAGQSKEHIELYTSNRRPVTEHEINNARHLAQAACAKKSLLIVMQPEQVYTGFYLSIPSRWLVEHLPQRSQDLVLRVDKTEWHVKYCYDRTHYTGELTLGWRKFALDNNLEEFDACVFQPMGKVYGTWLIDVKIFRVVKDITPPTIPKPPAKRGRKRAIRNIQTE 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal25g0568 670 Gene3D - 20 120 IPR015300 -
Lal25g0568 670 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 5 180 - -
Lal25g0568 670 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 516 650 - -
Lal25g0568 670 SUPERFAMILY DNA-binding pseudobarrel domain 21 115 IPR015300 -
Lal25g0568 670 CDD B3_DNA 38 115 IPR003340 GO:0003677
Lal25g0568 670 SUPERFAMILY DNA-binding pseudobarrel domain 545 631 IPR015300 -
Lal25g0568 670 Gene3D - 524 644 IPR015300 -
Lal25g0568 670 Pfam B3 DNA binding domain 35 115 IPR003340 GO:0003677
Lal25g0568 670 Pfam B3 DNA binding domain 547 628 IPR003340 GO:0003677
Lal25g0568 670 ProSiteProfiles B3 DNA-binding domain profile. 545 643 IPR003340 GO:0003677
Lal25g0568 670 MobiDBLite consensus disorder prediction 651 670 - -
Lal25g0568 670 ProSiteProfiles B3 DNA-binding domain profile. 23 117 IPR003340 GO:0003677
Lal25g0568 670 SMART B3_2 545 643 IPR003340 GO:0003677
Lal25g0568 670 SMART B3_2 26 117 IPR003340 GO:0003677
Lal25g0568 670 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 5 180 IPR044837 -
Lal25g0568 670 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 516 650 IPR044837 -
Lal25g0568 670 CDD B3_DNA 543 641 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal25g0568 Lal-Chr25 4214450 4223360 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lal25g0568 B3 2e-10 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal8g0612 8 4265027 4268307 Lal25g0568 25 4214450 4223360 LSH
Lal25g0568 25 4214450 4223360 Lal10g0796 10 15690527 15694224 LSH