Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal25g0567 ATGTTCCCTAATTCTCACCAAGTTATGAGAACCTTAGCACCTTTGAAAGAACCAGACCTCTCCTTAAACATAAGCCTACCCTTTATTTCAGATTCTGAACCCAAAGTGGGAAGCATTAATAAAACCCTTTACAATGATATGTGCTCAACTTCTGAGTCAGGTAGTAGTGGAAGTGATTTAAGCCATGAGAATATCAATAATAGCTTTTTACACCTTGTTCATCATCATAATGAACCCTCTTTGAGCTTAGGCTTTGAAACCACATGTTTGAATTCAAAACCCTTTATTCCATTACAACAAGGAATCTCAAGAAATTTCAACCACCATTTCCAATTACCACATGTTTATGGCAGAGATTTCAAAGGAAATGTAAGAATTGTTCATGGTATGAAAAGGAATGTTAGAGCTCCTAGGATGAGATGGACCACCACCCTTCATGCCCATTTTGTTCATGCAGTTCAGCTACTTGGTGGCCATGAAAGGGCAACTCCAAAGTCTGTGTTAGAGTTAATGAATGTTAAGGATCTAACCCTAGCACATGTCAAGAGTCACTTGCAGATGTATAGAACAGTGAAGAGCACTGTCAAAGGCACAGGTCCTGGACAGATTACAGTTATGGGCTTAAGCAGCACAAGGCAAGAGATTACAAATAATCTGCATAATGGAGTTTCAGTTTGTGATGCCAGAACCAATTTACCACACCTGCTGGAAAAAATCCACAGGTAA 726 0.3926 MFPNSHQVMRTLAPLKEPDLSLNISLPFISDSEPKVGSINKTLYNDMCSTSESGSSGSDLSHENINNSFLHLVHHHNEPSLSLGFETTCLNSKPFIPLQQGISRNFNHHFQLPHVYGRDFKGNVRIVHGMKRNVRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKSTVKGTGPGQITVMGLSSTRQEITNNLHNGVSVCDARTNLPHLLEKIHR 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal25g0567 241 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 137 190 IPR006447 GO:0003677
Lal25g0567 241 Pfam Myb-like DNA-binding domain 138 189 IPR001005 -
Lal25g0567 241 Gene3D - 136 193 - -
Lal25g0567 241 PANTHER MYB-LIKE DNA-BINDING DOMAIN, SHAQKYF CLASS PROTEIN 1 237 - -
Lal25g0567 241 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 1 237 IPR044847 GO:0000976|GO:0006355|GO:0010158
Lal25g0567 241 SUPERFAMILY Homeodomain-like 134 191 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal25g0567 Lal-Chr25 4198004 4203025 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lal25g0567 Myb_DNA-binding 8.6e-06 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal25g0567 25 4198004 4203025 Lal25g0567 25 4198004 4203025 ECH
Lal8g0611 8 4248791 4253307 Lal25g0567 25 4198004 4203025 LSH
Lal25g0567 25 4198004 4203025 Lal21g0167 21 1121791 1123450 PCT
Lal21g0167 21 1121791 1123450 Lal25g0567 25 4198004 4203025 PCT