Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal25g0542 ATGTATCCAAATCAAGCCTTTTCTTCTGGATCTTATGTGGAAATGTTGTCCGGGACTCCCCTGTTACCTCATAACTACAATGAATCTGTTGGAGGAAAAAATGGGTTCAATTTTATTACAAGTATAAGTGACACAATGACTATGCACCCTATTAATGGGCATTCCAATGCTGAAACTAGTGATCTAGCATGCAACTCTTTTGTTGGTGCTGGAGATTCCCATGTTGTTCCAAGGACACAATTTGACCGTGACCAAAATGCACGGTGCCAGGGCTTGTCTCTTAGCCTCGGGACATTGATGATGCCTCCTTCCATTGCATCTGTCCCTCACTTCCAGCACCAATATCCCGACAAAGGTTTCACTTCACTAATGACTTCTTCTACTCCGAACATAAAGGGGAATGCATCTCTTAACGATGACGAGGTCAGTTTTAAGGAATTGAGGAATGCTGAATGCATGGAATCTGTATCTTCTGGAGGATTTCACAACAGTATCAGAAGAGAGGATTTGTATAGTCCACACCCCCCAATCTGCCTCGATGAAGGCCAGTCTGATTCATTCTTGAATGGATCATCGGGTTTTTCGAACATGATTTTAAACTCTCGATACGTTAAGGCAGCACAGGAGTTGCTTGATGAAATTGTTAATGTCCGAAAGGCTTTGAAGCAAACTGGATTGGAAAAACAACAAAGTTTTCGTGATATTGGATTAGATAGCTCCAAAGGTTATGATGGAAAATCTAACAGTCAATCTATGCAAGTATCTTCAGGCCCTTCTGGTTCTATTACAAACACTTCATCTGAGCTTTCACCTACAGAACGACAGAATTTGTTGGACAAGAAGACAAAACTTTTGTCCATGTTAGATGAGGTAGATAAAAGATATCGACAGTACTGCCATCACATGCAGAATGTTGTGTCATCTTTCGATATGGTTGCTGGGTGTGGAGCAGCTGAACCATATACTGCACTTGCTTTGCACACAATTTCTCGCCACTTTCGCTCATTGCGTGATGCAATTAGCGGCCAAATTCAAGTGACTCAAAGGAGTCTTGGAGAGCAAGAAGGAATACCTCGTCTTCGCTATGTTGATCAGAAGCTTAGGCAACAAAAGGCCCTTCAGCAGCTCGGTGTAATGCGACAAGCTTGGAGGCCTCAGAGGGGACTTCCTGAAAGCTCTGTTTCAATACTCCGAGCATGGCTGTTTGAGCATTTCCTGAATCCTTATCCAAAGGATTCAGAGAAAATTATGCTTGCAAGGCAAACAGGCTTGACCAGAAACCAAGTGGCAAATTGGTTCATCAATGCAAGGGTGCGTCTTTGGAAGCCAATGGTTGAAGATATGTACAAAGAAGAATTCGGCGATTCTGAGATGAGTAGCAACAATCTTTTACCAGAAAATGTTTCCGATAAAGCTCCAAGAGTTCCAAAATCTGATAATAAAAGGGAAGAGTCTCAGGTTCAACATGGCCAATTTCATGGAATGAAGTTGGACCATGCCTCCTCCACTACAGAATTAGAAGGACGGATCCAAAGTCGTAATGATCAAGGAGAAAATGATATGGATTCTAGAGTTCGGAAATTGCAGAGTGACCAAAGGTTTAACATGAACAACAATGACCCTTATTCAAGTGCACCTATCCCAATCAATCAGAATGGTGATGACTGCAGCCTAATGGCTTCTACTACTCCTGCAACATACGATTTATCGGAGTTCGGCAACTTTTCCGCGGGTGGGCGTGTGTCCCTTTCGTTAGAGTTGAGGAACTGCGAAAGGAATGAATTTGTAGTGTCTAATGATGACATACATAAAAGAAGTAATGAGACATTGGCTTCTTCCTCTGATACTGATTTGCTAGATTATCATTTCACAGACCCCGAAAAGCAACAACACAAGTTTAACAACTCTCATTTATTACATGAGTTTGTTGTCTGA 1935 0.4202 MYPNQAFSSGSYVEMLSGTPLLPHNYNESVGGKNGFNFITSISDTMTMHPINGHSNAETSDLACNSFVGAGDSHVVPRTQFDRDQNARCQGLSLSLGTLMMPPSIASVPHFQHQYPDKGFTSLMTSSTPNIKGNASLNDDEVSFKELRNAECMESVSSGGFHNSIRREDLYSPHPPICLDEGQSDSFLNGSSGFSNMILNSRYVKAAQELLDEIVNVRKALKQTGLEKQQSFRDIGLDSSKGYDGKSNSQSMQVSSGPSGSITNTSSELSPTERQNLLDKKTKLLSMLDEVDKRYRQYCHHMQNVVSSFDMVAGCGAAEPYTALALHTISRHFRSLRDAISGQIQVTQRSLGEQEGIPRLRYVDQKLRQQKALQQLGVMRQAWRPQRGLPESSVSILRAWLFEHFLNPYPKDSEKIMLARQTGLTRNQVANWFINARVRLWKPMVEDMYKEEFGDSEMSSNNLLPENVSDKAPRVPKSDNKREESQVQHGQFHGMKLDHASSTTELEGRIQSRNDQGENDMDSRVRKLQSDQRFNMNNNDPYSSAPIPINQNGDDCSLMASTTPATYDLSEFGNFSAGGRVSLSLELRNCERNEFVVSNDDIHKRSNETLASSSDTDLLDYHFTDPEKQQHKFNNSHLLHEFVV 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal25g0542 644 Gene3D - 380 457 - -
Lal25g0542 644 SUPERFAMILY Homeodomain-like 384 450 IPR009057 -
Lal25g0542 644 MobiDBLite consensus disorder prediction 472 489 - -
Lal25g0542 644 Pfam Associated with HOX 197 341 IPR006563 -
Lal25g0542 644 MobiDBLite consensus disorder prediction 237 275 - -
Lal25g0542 644 MobiDBLite consensus disorder prediction 454 523 - -
Lal25g0542 644 Coils Coil 204 224 - -
Lal25g0542 644 CDD homeodomain 383 444 IPR001356 GO:0003677
Lal25g0542 644 ProSiteProfiles 'Homeobox' domain profile. 380 443 IPR001356 GO:0003677
Lal25g0542 644 SMART prehox3 192 342 IPR006563 -
Lal25g0542 644 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 10 29 606 - -
Lal25g0542 644 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 29 606 - -
Lal25g0542 644 MobiDBLite consensus disorder prediction 237 273 - -
Lal25g0542 644 SMART HOX_1 383 447 IPR001356 GO:0003677
Lal25g0542 644 Pfam Homeobox KN domain 400 439 IPR008422 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal25g0542 Lal-Chr25 3957838 3963436 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Lal25g0542 POX 4.8e-49 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal25g0542 25 3957838 3963436 Lal25g0542 25 3957838 3963436 ECH
Lal25g0542 25 3957838 3963436 Lal10g0864 10 16157930 16162433 LSH
Lal25g0542 25 3957838 3963436 Lal21g0139 21 967093 971671 PCT
Lal17g0073 17 448482 457513 Lal25g0542 25 3957838 3963436 PCT
Lal21g0140 21 971859 975256 Lal25g0542 25 3957838 3963436 PCT
Lal4g0089 4 541388 545016 Lal25g0542 25 3957838 3963436 PCT