Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal25g0541 ATGATGAAATCAGGGATGGAAATTGATGATAGAAAACAAGTTAAGAGAACAGCACAAGCTAGTTCTAGGAAAGGGTGTATGAGAGGTAAAGGTGGTCCTGAGAATGCAAGTTGCACCTACAAAGGTGTTAGGCAAAGAACTTGGGGGAAATGGGTTGCCGAAATCCGCGAACCTAACCGCGGTGCTCGGCTCTGGCTTGGAACATTTGATACATCCCACGATGCTGCTTTGGCTTATGATGCCGCAGCTCGTAAGCTTTATGGTCCAGATGCAAAGCTCAATCTTCCCGAACTCTCTACTATTTCTCAATGCCCATCTTCTAATACCACCCGAACTCAAACCCAAACCCAAACCCAAAATTTACAAGCGCAATACTTACCTCAACTTCATCATAATTTTGGTGTTCCTAACACTAACTCTCATAATCTCAATATGAGTATGAACCAAGTTGGTGGTGGTGTTGCACCAACTTACACCAATAACTCTATCATGTCACTTCCTTTGCAGGCTAATGTTATGTCCATGGATAATTTTTCCAAGCCCATGGATAATGAGGACTTTCATTCAATTTTAGGAACATCGAATGAAATCATGCCAGTGTTTGATGAATCTATATGGAAAGAAGCTGCTATGTCACTAGATATAGCTAGGTCAATGGATTTCCCTATGACCCAAGATCTTGGAATTTATGCAGATGGAAACTTAGCAGAAATAAGTGCATGGGACTCTCTCCAAACTCCATGGTGCATGTAA 753 0.4183 MMKSGMEIDDRKQVKRTAQASSRKGCMRGKGGPENASCTYKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSHDAALAYDAAARKLYGPDAKLNLPELSTISQCPSSNTTRTQTQTQTQNLQAQYLPQLHHNFGVPNTNSHNLNMSMNQVGGGVAPTYTNNSIMSLPLQANVMSMDNFSKPMDNEDFHSILGTSNEIMPVFDESIWKEAAMSLDIARSMDFPMTQDLGIYADGNLAEISAWDSLQTPWCM 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal25g0541 250 SMART rav1_2 39 102 IPR001471 GO:0003700|GO:0006355
Lal25g0541 250 SUPERFAMILY DNA-binding domain 39 96 IPR016177 GO:0003677
Lal25g0541 250 ProSiteProfiles AP2/ERF domain profile. 39 96 IPR001471 GO:0003700|GO:0006355
Lal25g0541 250 PRINTS Ethylene responsive element binding protein signature 40 51 IPR001471 GO:0003700|GO:0006355
Lal25g0541 250 PRINTS Ethylene responsive element binding protein signature 62 78 IPR001471 GO:0003700|GO:0006355
Lal25g0541 250 Pfam AP2 domain 39 88 IPR001471 GO:0003700|GO:0006355
Lal25g0541 250 MobiDBLite consensus disorder prediction 1 38 - -
Lal25g0541 250 CDD AP2 38 98 IPR001471 GO:0003700|GO:0006355
Lal25g0541 250 Gene3D AP2/ERF domain 39 97 IPR036955 GO:0003700|GO:0006355
Lal25g0541 250 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2D 14 222 - -
Lal25g0541 250 MobiDBLite consensus disorder prediction 1 17 - -
Lal25g0541 250 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 14 222 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal25g0541 Lal-Chr25 3948285 3949037 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Lal25g0541 AP2 6.1e-15 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal25g0541 25 3948285 3949037 Lal25g0541 25 3948285 3949037 ECH
Lal25g0541 25 3948285 3949037 Lal17g0071 17 441453 442478 PCT
Lal25g0541 25 3948285 3949037 Lal4g0087 4 531905 532669 PCT
Lal17g0071 17 441453 442478 Lal25g0541 25 3948285 3949037 PCT
Lal4g0087 4 531905 532669 Lal25g0541 25 3948285 3949037 PCT