Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal25g0539 ATGGGCCGTTACTCACTCTTGTCTCTCCTCCTCTTCGCCGCCGTAGCAACCACCGTCATCTCTGATCAAGCCACCGACAGCGACGATCTCCTCATCCGTCAAGTCGTCGACGACGATCACTCGCTGAACGCAGAACACCACTTCACTAAATTCAAAACAACGTTCGGCAAAACCTACGCTACGGAAGAAGAGCACAACTACCGCTTCGCTGTGTTCAAATCAAACTTGCGCAGGGCCAAGAAACACGCCAAACTCGATCCCTCCGCCGTACACGGTGTAACTAAATTCTCTGATCTTACTCCGAGGGAGTTCCGCCGCCAGTTCCTTGGCCTTAAGCGCCGTCTCCGTTTACCGGCTGATGCTCATAAGGCACCGATCCTTCCAACCAATAACCTCCCTGAAGATTTTGATTGGCGTGATAAGGGAGCTGTCACTGGCGGCTCATGTGGTTCATGCTGGTCATTTAGTGCTACTGGAGCGTTGGAGGGAGCTCATTTTCTGGCTACTGGCAATCTAGAGAGCCTTAGCGAGCAACAGCTTGTGGATTGTGATAATGTGTGTGATCCAGAAGAACAAGGAGCTTGTGACGCGGGTTGTAATGGTGGGTTGATGAATAATGCATTCCAGTACATACTTCAATCTGGGGGAGTACAGCGAGAAAAGGACTATCCTTACACCGGAAGAGATGGCAAATGCCATTTTGACAAAAGCAAAATCGTTGCTTCAGTGTCAAATTTCAGTGTTGTATCTCTTGATGAGGATCAAATTGCTGCAAATCTAGTGCATAATGGCCCCCTTGCAGTTGCTATCAATGCTGTATATATGCAGACATATATAGGTGGTGTCTCATGCCCATATATCTGCGGAAAACATCAGGATCATGGTGTTCTTTTGGTCGGTTATGGAGCCGGTGAATATGCTCCTATTAGGTTGAAGAAGAAACCCTTCTGGATCATAAAGAATTCATGGGGGGAAAACTGGGGAGAGAATGGATACTACAAGATCTGCAGAGTTCGGAATATATGCGGAGTAGATTCCATGGTCTCAACCGTTGCTGCTGCTATAAGTACACCCAGCAATTAA 1083 0.4774 MGRYSLLSLLLFAAVATTVISDQATDSDDLLIRQVVDDDHSLNAEHHFTKFKTTFGKTYATEEEHNYRFAVFKSNLRRAKKHAKLDPSAVHGVTKFSDLTPREFRRQFLGLKRRLRLPADAHKAPILPTNNLPEDFDWRDKGAVTGGSCGSCWSFSATGALEGAHFLATGNLESLSEQQLVDCDNVCDPEEQGACDAGCNGGLMNNAFQYILQSGGVQREKDYPYTGRDGKCHFDKSKIVASVSNFSVVSLDEDQIAANLVHNGPLAVAINAVYMQTYIGGVSCPYICGKHQDHGVLLVGYGAGEYAPIRLKKKPFWIIKNSWGENWGENGYYKICRVRNICGVDSMVSTVAAAISTPSN 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal25g0539 360 Gene3D Cysteine proteinases 20 352 - -
Lal25g0539 360 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 316 335 IPR025661 -
Lal25g0539 360 SMART Inhibitor_I29_2 48 104 IPR013201 -
Lal25g0539 360 Pfam Papain family cysteine protease 132 350 IPR000668 GO:0006508|GO:0008234
Lal25g0539 360 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 29 353 - -
Lal25g0539 360 SMART pept_c1 132 352 IPR000668 GO:0006508|GO:0008234
Lal25g0539 360 Pfam Cathepsin propeptide inhibitor domain (I29) 48 104 IPR013201 -
Lal25g0539 360 PRINTS Papain cysteine protease (C1) family signature 146 161 IPR000668 GO:0006508|GO:0008234
Lal25g0539 360 PRINTS Papain cysteine protease (C1) family signature 294 304 IPR000668 GO:0006508|GO:0008234
Lal25g0539 360 PRINTS Papain cysteine protease (C1) family signature 316 322 IPR000668 GO:0006508|GO:0008234
Lal25g0539 360 SUPERFAMILY Cysteine proteinases 44 351 IPR038765 -
Lal25g0539 360 PANTHER CYSTEINE PROTEASE RD19C-RELATED 29 353 - -
Lal25g0539 360 CDD Peptidase_C1A 133 351 IPR039417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal25g0539 Lal-Chr25 3921102 3923803 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal25g0539 25 3921102 3923803 Lal25g0539 25 3921102 3923803 ECH
Lal8g0556 8 3858100 3860532 Lal25g0539 25 3921102 3923803 LSH
Lal25g0539 25 3921102 3923803 Lal21g0135 21 938789 946623 PCT
Lal21g0135 21 938789 946623 Lal25g0539 25 3921102 3923803 PCT