Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lal25g0538 | ATGGCTGGTTTCTTCTCTCTAGGTGGAAAAGGTCCACAAAACAAGGAAGAAGAACAAGAAAGAGAAGTTAACACTCAGTTCTTGTTCAGAAACGAAGAGATCTACAATAGAGGGTTTGAGATATGGCCACAATATCATAATAATAACCAAAACTTGAACACTAACACCACCACCAACAACAACAACTACTACTACTCCTTAGGGGTAGGGTCTAGTAGAAGAAACTCATCATCATCTAATAACGTAGTTGACGACATCGTTTCAGTTTCTGATGAAAGTACTCGATTTGGGTTCACAGTGATGAGGGCTTCTGGATCATCAGGTTTTGGTGGAATGAATTGTCAAGATTGTGGGAATCAAGCAAAGAAAGATTGTCCTCACCTTCGATGCAGAACTTGTTGTAAGAGTCGAGGGTTTCAGTGCCAAACCCATGTTAAGAGCACTTGGGTCCCTGCTGCTAAACGACGTGAACGACAACAACAATTATCATCGTTGCAGCAACAGAATGAACAACAACAACAGCAACAGCAACAGCAACATTTTTGGGGAGATCACTCTTCTAGAAGAAATAGAGAACATCATGGTGCTGGTTCTCTTGCTGTTGCTTCTCTACCTGTCACTACAACAGGGTTGGAGCTTGGACAATTTCCACCCGAACTGAATTCACCAGCTTTGTTTCGGTGTGTAAAAGTGAGCCCAATGGATGCACCAGATGAGAGGTATGCATATCAAACAGCAGTGAAAATAGGAGGACATGTTTTCAAGGGAATTCTATATGATCAAGGAACGAACAATCCTTACACTAGTGCCACAGGAGGAGCTGGTGAAGGTTCCTCCGGTGGTGGTGGCGGCAATGATGGTGATGCTCAGCAACTAACTCTCACCACCACCACCACAACCACCGGCAACCCATTTGACCATTCACAACTCTACCCTCCTCCACTCAATGCTTTCATGGCTGGTACGCAATTCTTCCCACCAAGATCCTAA | 990 | 0.4404 | MAGFFSLGGKGPQNKEEEQEREVNTQFLFRNEEIYNRGFEIWPQYHNNNQNLNTNTTTNNNNYYYSLGVGSSRRNSSSSNNVVDDIVSVSDESTRFGFTVMRASGSSGFGGMNCQDCGNQAKKDCPHLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLSSLQQQNEQQQQQQQQQHFWGDHSSRRNREHHGAGSLAVASLPVTTTGLELGQFPPELNSPALFRCVKVSPMDAPDERYAYQTAVKIGGHVFKGILYDQGTNNPYTSATGGAGEGSSGGGGGNDGDAQQLTLTTTTTTTGNPFDHSQLYPPPLNAFMAGTQFFPPRS | 329 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lal25g0538 | 329 | PANTHER | PROTEIN SHI RELATED SEQUENCE 7 | 1 | 327 | - | - | |
| Lal25g0538 | 329 | MobiDBLite | consensus disorder prediction | 152 | 196 | - | - | |
| Lal25g0538 | 329 | MobiDBLite | consensus disorder prediction | 268 | 329 | - | - | |
| Lal25g0538 | 329 | Pfam | Domain of unknown function (DUF702) | 111 | 264 | - | - | |
| Lal25g0538 | 329 | MobiDBLite | consensus disorder prediction | 284 | 307 | - | - | |
| Lal25g0538 | 329 | TIGRFAM | LRP1_Cterm: LRP1 C-terminal domain | 215 | 262 | IPR006511 | - | |
| Lal25g0538 | 329 | PANTHER | PROTEIN LATERAL ROOT PRIMORDIUM 1 | 1 | 327 | IPR007818 | GO:0003700|GO:0006355 | |
| Lal25g0538 | 329 | Coils | Coil | 155 | 175 | - | - | |
| Lal25g0538 | 329 | TIGRFAM | put_zinc_LRP1: putative zinc finger domain, LRP1 type | 113 | 155 | IPR006510 | - | |
| Lal25g0538 | 329 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
| Lal25g0538 | 329 | MobiDBLite | consensus disorder prediction | 157 | 183 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lal25g0538 | Lal-Chr25 | 3905058 | 3907407 | Dispersed/Wgd |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | SRS | Lal25g0538 | DUF702 | 1.6e-65 | No_clan |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Lal25g0538 | 25 | 3905058 | 3907407 | Lal1g0204 | 1 | 1221889 | 1223522 | ECH | |
| Lal25g0538 | 25 | 3905058 | 3907407 | Lal25g0538 | 25 | 3905058 | 3907407 | ECH | |
| Lal8g0554 | 8 | 3848411 | 3850205 | Lal25g0538 | 25 | 3905058 | 3907407 | LSH | |
| Lal25g0538 | 25 | 3905058 | 3907407 | Lal10g0869 | 10 | 16198212 | 16199850 | LSH | |
| Lal25g0538 | 25 | 3905058 | 3907407 | Lal21g0130 | 21 | 904959 | 907545 | PCT | |
| Lal25g0538 | 25 | 3905058 | 3907407 | Lal4g0084 | 4 | 507223 | 509833 | PCT | |
| Lal21g0130 | 21 | 904959 | 907545 | Lal25g0538 | 25 | 3905058 | 3907407 | PCT | |
| Lal4g0084 | 4 | 507223 | 509833 | Lal25g0538 | 25 | 3905058 | 3907407 | PCT |