Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal25g0532 ATGGGAGTTCCAGCTTTCTATAGATGGCTAGCGGAGAAATATCCAATGGTGATTGTGGATGCGATTGAAGAGGAACCAGTGGTTATCGAAGGTGTTCAGATTCCGGTTGATACGAGTAAAGAGAACCCTAACAATATTGAATACGATAACCTCTACCTCGACATGAATGGCATCATTCATCCTTGCTTCCATCCTGAAGATAGGCCATCTCCGACGTCGTTTGATGAGGTGTTTGAGTGCATGTTTGACTACATTGACAGGCTTTTTTGTATGGTGCGACCTAGGAAGCTTCTCTATATGGCTATTGACGGTGTTGCACCAAGGGCTAAAATGAATCAACAACGTTCTAGGCGGTTTAGAGCAGCAAAAGATGCAGCTGATGCGGCTGAGGAAGAAGCAAGGTTAAGGGAGGAATTTGAGAGGGAGGGCAGGAGGCTTCCTCTCAAAGAAGAGTCACAGACTTTTGATTCAAATGTCATCACACCTGGAACTGAATTTATGGCTGTTTTGTCAATTGCTCTTCAGTACTATGTTCATCTTAGGTTGAACAATGATCCTGGCTGGCAAAATATTAAGGTTATTCTTTCTGATGCAAATGTTCCTGGTGAAGGGGAGCATAAGATTATGTCCTATATTCGCCTGCAGAGAAATCTTAAAGGTTTTGACCCAAATACACGACACTGCCTGTATGGTTTGGATGCTGATTTGATTATGTTGGCTTTGGCTACCCATGAAGTCCATTTTTCAATTCTTAGAGAGATTGTGTTTACTCCTGGACAAGACAAATGCTTCCTTTGTGGCCAGATGGGTCATATGGCTGCAAACTGTGAGGGAAAGGCAAAGCGTAAGGCAGGAGAGTTTGATGAGAAGGGAGATGCTATTGTGGCTAAAAAGCCCTTCCAGTTCCTAAACATTTGGACTTTGAGGGAATATCTGGAGCATGAAATGAGAATACCTAATCTTTCTTTCGAGATTGAGTTTGAGCGGATTGTAGATGATTTTATTTTCATATGCTTTTTTGTTGGCAATGATTTCCTACCACATATGCCTACTCTAGAGATTCGCGAGGGTGCAATTAACTTGCTGATGGCAGTGTACAAGAAGGAGTTTAAAGCATTGGGTGGTTACTTAACCGAGGGAAGCAAGCCAAATTTGAGCAAGGTGGAGCACTTTATTCAGGCTGTTGGATCTTATGAAGATAGAATATTCCAGAAAAGAGCTCGATTGCATCAGCGACAAGCAGAAAGAATAAAGCGTGACAAATCACAAGCAAGAAGAGGAGATGATGCTGGGCCTCAAGCTCAGCCAGATTCTCTAGTTGCTGTTTCACGATTTCATGGATCTCGTCTTGCTTCAGCTCCAACACCTTCACCATATCAAAAATCTGGGCATCGAAAACACAATGAAGAGGATTCTCCTCATAAAGTTGCTAGGTTGTCTTCATCAGGAGCAAGTGTTGCTGCTGCAATTGTCGAAGCCGAGAATAGTCTTGAAACAGATGTTCAAGATAATAAAGACGAACTGAAAGCAAAACTGAAGGAGGTACTTCGTGAGAAATCTGATGCATTCAACTCAAAAAATCCTGAAGAGGACAAGATTAAGTTGGGAGAGCCAGGATGGAAAGAGAGGTACTATGAGGAAAAATTTTCTGCTGAATCACCTGAGGAACGTGAAATGATACGGAAAGATGTTGTCTTGAAATACACTGAAGGTTTATGTTGGGTGATGCACTATTATTATGAAGGCGTTTGTTCTTGGAACTGGTTTTATCCTTATCATTATGCCCCCTTTGCGTCTGATCTCAAGAGCCTTGGTGAGCTTAATATTACCTTCAATCTAGGTACCCCATTCAAACCATTCGACCAGCTTCTAGGGGTTTTTCCTGCTGCAAGTTCTCATGCACTTCCCGAGCCATATAGGAAACTTATGTCAGATCCAAGCTCACCAATTATTGATTTTTATCCAATTGACTTTGAAGTGGACATGAATGGAAAACGATATGCTTGGCAGGGCATTGCGAAATTGCCTTTTATTGATGAAACGCGTCTTCTTTCAGAAGTCCGAAAAATTGAAAATTTGTTAACGCCGGACGAAACGCGACGAAATGCTATAATGTTCGACTTGCTTTTTGTGAATTCTTGTCATCCTCTCTCTGCGTGCATTAGTACACTTGACAACAAATGTAGAAACTTGTCGGACAGTAAACGTGCTGAGGTCAAAGAACAAATCGATCCTAACAAAAGGGATACTTGCAGTGGTGGAATGAATGGTTATTTATCCTTATGTGGTGGAGAGCCTTGCCCTCCGGTCTTCAGGTCTCCTGTCTCAAGCATGGAAGACATTATGGACAACCATGTCATATGTGCAATATATAGACTCCCAGATCCTCATAAACACATTACCCAACCTCCAGAAGGAGTTAAATTTCCTAAGAAGATTGTGACAATTGGGGATCTTAAACCTGAACCTGTTTTATGGCATGAAGATTCAGGCAGGAGACATTATCAACAACAAAGTGCGAGGCAAAACCCTCCTGGATCTATTTCTGGCCCGGAGCTTGGGGAAGCAGCACACAGACTTGTCGTCAATTCATTACAGCAGAAGGTTAGCAGTAATGGATACCGCCATCCCAATAATGGACCACCTCTATCTTATGCTGCACCAAGGGGTCATCCACAACCATATCCACCAGTCCATGGCCAACCACCATTTCTGCCATACCCAGCTGCACCCGCCCCTCAGCAGTACGGTTATAATCAATCATATGTGCCACCACCTGCGCACAATCCTCATCATCAATCAAATTATAATGAAAGAAATCACCATCAACACCAGAGATCACATCCTTATGGAAGAAATAATAATGGAAATGGAGGAAATGCAAGGCATGGATATCATCAACAATCAGGAAATAATCAGAACGCTAGGTTTGTGAATCAGCCAGGTGCACATGCTAGTCACCCCAGGCAAAACTTCCAATCATCTAGACCTCCTTACCAGAACTGGGTTCCACGGAATAACTCAAATGACCCCAGAGAAAATGCTCAACATCCACCACCCAATCAATATTCTGTATTAGATAGAAGAGGTAATAACAGGAAGCCAATGCCACCACATGGTAATAGTCACAAATAA 3135 0.4252 MGVPAFYRWLAEKYPMVIVDAIEEEPVVIEGVQIPVDTSKENPNNIEYDNLYLDMNGIIHPCFHPEDRPSPTSFDEVFECMFDYIDRLFCMVRPRKLLYMAIDGVAPRAKMNQQRSRRFRAAKDAADAAEEEARLREEFEREGRRLPLKEESQTFDSNVITPGTEFMAVLSIALQYYVHLRLNNDPGWQNIKVILSDANVPGEGEHKIMSYIRLQRNLKGFDPNTRHCLYGLDADLIMLALATHEVHFSILREIVFTPGQDKCFLCGQMGHMAANCEGKAKRKAGEFDEKGDAIVAKKPFQFLNIWTLREYLEHEMRIPNLSFEIEFERIVDDFIFICFFVGNDFLPHMPTLEIREGAINLLMAVYKKEFKALGGYLTEGSKPNLSKVEHFIQAVGSYEDRIFQKRARLHQRQAERIKRDKSQARRGDDAGPQAQPDSLVAVSRFHGSRLASAPTPSPYQKSGHRKHNEEDSPHKVARLSSSGASVAAAIVEAENSLETDVQDNKDELKAKLKEVLREKSDAFNSKNPEEDKIKLGEPGWKERYYEEKFSAESPEEREMIRKDVVLKYTEGLCWVMHYYYEGVCSWNWFYPYHYAPFASDLKSLGELNITFNLGTPFKPFDQLLGVFPAASSHALPEPYRKLMSDPSSPIIDFYPIDFEVDMNGKRYAWQGIAKLPFIDETRLLSEVRKIENLLTPDETRRNAIMFDLLFVNSCHPLSACISTLDNKCRNLSDSKRAEVKEQIDPNKRDTCSGGMNGYLSLCGGEPCPPVFRSPVSSMEDIMDNHVICAIYRLPDPHKHITQPPEGVKFPKKIVTIGDLKPEPVLWHEDSGRRHYQQQSARQNPPGSISGPELGEAAHRLVVNSLQQKVSSNGYRHPNNGPPLSYAAPRGHPQPYPPVHGQPPFLPYPAAPAPQQYGYNQSYVPPPAHNPHHQSNYNERNHHQHQRSHPYGRNNNGNGGNARHGYHQQSGNNQNARFVNQPGAHASHPRQNFQSSRPPYQNWVPRNNSNDPRENAQHPPPNQYSVLDRRGNNRKPMPPHGNSHK 1044
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal25g0532 1044 PANTHER 5'-3' EXORIBONUCLEASE 1 984 - -
Lal25g0532 1044 MobiDBLite consensus disorder prediction 887 910 - -
Lal25g0532 1044 Pfam XRN 5'-3' exonuclease N-terminus 1 253 IPR004859 GO:0003676|GO:0004527
Lal25g0532 1044 SUPERFAMILY Retrovirus zinc finger-like domains 258 283 IPR036875 GO:0003676|GO:0008270
Lal25g0532 1044 MobiDBLite consensus disorder prediction 462 476 - -
Lal25g0532 1044 CDD PIN_XRN1-2-like 51 312 - -
Lal25g0532 1044 PANTHER 5'->3' EXORIBONUCLEASE 1 984 IPR027073 -
Lal25g0532 1044 MobiDBLite consensus disorder prediction 949 1028 - -
Lal25g0532 1044 Gene3D - 1 134 - -
Lal25g0532 1044 Gene3D - 151 389 - -
Lal25g0532 1044 ProSiteProfiles Zinc finger CCHC-type profile. 262 276 IPR001878 GO:0003676|GO:0008270
Lal25g0532 1044 PIRSF Exonuclease_Xrn2 1 1028 IPR017151 GO:0004534|GO:0005634|GO:0006139
Lal25g0532 1044 Coils Coil 112 142 - -
Lal25g0532 1044 MobiDBLite consensus disorder prediction 829 852 - -
Lal25g0532 1044 MobiDBLite consensus disorder prediction 413 481 - -
Lal25g0532 1044 MobiDBLite consensus disorder prediction 413 427 - -
Lal25g0532 1044 Coils Coil 498 525 - -
Lal25g0532 1044 Pfam Xrn1 helical domain 325 818 IPR041412 -
Lal25g0532 1044 MobiDBLite consensus disorder prediction 914 933 - -
Lal25g0532 1044 MobiDBLite consensus disorder prediction 870 1044 - -
Lal25g0532 1044 Pfam Zinc knuckle 262 276 IPR001878 GO:0003676|GO:0008270
Lal25g0532 1044 SMART c2hcfinal6 262 278 IPR001878 GO:0003676|GO:0008270
Lal25g0532 1044 Gene3D - 605 704 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal25g0532 Lal-Chr25 3810849 3831539 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal25g0532 25 3810849 3831539 Lal25g0532 25 3810849 3831539 ECH
Lal25g0532 25 3810849 3831539 Lal10g0879 10 16320859 16329932 LSH