Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal25g0493 ATGTTTGCCAATAACGTATCTCCTTTATCAGTTCCAACTTCTGATCCTTCTTTCTCTTCTCCTGAGAATGGAACTTCCACCAATAAAAGGAAGAGAAGACCAGCAGGAACACCAGATCCAGATGCAGAAGTTGTGTCACTATCACCAAAGACCTTATTGGAATCAGATCGTTATGTGTGTGAGATCTGCAACCAAGGATTTCAGAGGGACCAGAACCTTCAAATGCATAGAAGGAGACACAAGGTGCCATGGAAACTATTGAAGAGGGAAACACCAATGGTGAAGAAGAGAGTGTTTGTGTGTCCTGAACCAAATTGCTTGCACCATCAACCATGTCATGCACTTGGAGATCTTGTTGGGATAAAGAAACATTTCAGAAGAAAACATAGCAATTATAAACAATGGGTTTGTGAAAGATGCTCTAAAGGTTATGCTGTGCAATCTGATTACAAAGCTCATCTCAAAACTTGTGGCACTAGAGGTCACTCTTGTGATTGTGGTCGAGTTTTCTCAAGGGTGGAGAGCTTTATTGAGCATCAAGATGTTTGTAACATGGGGAGACAACCTCATCAACCACTGCAACAATTACAACAACTACCTGCATGTTTGTCTAGAACAGCTTCAAGCCCAAGCCCATCAAGTGAAACCAATTTCAGCACATGTCCTAATTGGCCACAAGGACTAGTAGTAATGCAAAAACCAACAAATGAACCCACATTCTTCAATATGAACCCTACTTCTTCCACTATTGCCATCAATGATGAAACTTCATTATCCAAGAAAAATCATAATCTTCACCCCAACTTGGACCTTCAACTCTCAACAAAAAACAACTCAAACACTTACACCTTTGATGTTGTAGCTGCATCATTGTCACCTAACAAGAGAGATGATCATTATTACCATCAAAAGCATTGCACACAGTTGCAGCTATCAATTGGTTCATCAGATAACAATGCTAAAAATGACCAATCAAATAGGAACAACAACAACAACTCATTACCAAAAGAGACTAGTAGTGAGAAACAAGGCATGGCTTTGTTAAGTGTAGCCATGGCAGAGAAAGTTTATGCTGAAGAAGCAAGAAAGCAAGCAAAGAAGCAGATAGAATTAGCAGAACAAGAGTTCACAAATGCTAAAAGGATTAGACAACAAGCACAAGTGGAACTTGAAAAAGCCTATGCTTTGAAAGAGAATGCAATGAAGCAGATAAACTCCATCATGGTTCAAATCACTTGCCATGCTTGCAAGCAAAAGTTTCAAGCACGAACCACAACAAGTACCACCTTTGATCATGAGAATAATAGCTCTTTGGGGTTAAGTTACGTTTCTTCTGCTATAACAATAGAAGGTGACGAAGTAGAAAACAAGAATGGGAAAGATCATTGGAAATCAAACAACTAA 1404 0.3925 MFANNVSPLSVPTSDPSFSSPENGTSTNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETPMVKKRVFVCPEPNCLHHQPCHALGDLVGIKKHFRRKHSNYKQWVCERCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDVCNMGRQPHQPLQQLQQLPACLSRTASSPSPSSETNFSTCPNWPQGLVVMQKPTNEPTFFNMNPTSSTIAINDETSLSKKNHNLHPNLDLQLSTKNNSNTYTFDVVAASLSPNKRDDHYYHQKHCTQLQLSIGSSDNNAKNDQSNRNNNNNSLPKETSSEKQGMALLSVAMAEKVYAEEARKQAKKQIELAEQEFTNAKRIRQQAQVELEKAYALKENAMKQINSIMVQITCHACKQKFQARTTTSTTFDHENNSSLGLSYVSSAITIEGDEVENKNGKDHWKSNN 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal25g0493 467 MobiDBLite consensus disorder prediction 1 25 - -
Lal25g0493 467 Coils Coil 355 403 - -
Lal25g0493 467 PANTHER PROTEIN INDETERMINATE-DOMAIN 16-LIKE 1 449 - -
Lal25g0493 467 ProSitePatterns Zinc finger C2H2 type domain signature. 60 80 IPR013087 -
Lal25g0493 467 ProSiteProfiles Zinc finger C2H2 type domain profile. 58 80 IPR013087 -
Lal25g0493 467 SMART c2h2final6 99 129 IPR013087 -
Lal25g0493 467 SMART c2h2final6 135 162 IPR013087 -
Lal25g0493 467 SMART c2h2final6 58 80 IPR013087 -
Lal25g0493 467 ProSiteProfiles Zinc finger C2H2 type domain profile. 155 189 IPR013087 -
Lal25g0493 467 PANTHER OS03G0310200 PROTEIN 1 449 IPR039288 GO:0009630
Lal25g0493 467 MobiDBLite consensus disorder prediction 314 341 - -
Lal25g0493 467 Gene3D Classic Zinc Finger 45 131 - -
Lal25g0493 467 MobiDBLite consensus disorder prediction 1 44 - -
Lal25g0493 467 Pfam Zinc finger, C2H2 type 58 80 IPR013087 -
Lal25g0493 467 SUPERFAMILY beta-beta-alpha zinc fingers 55 81 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal25g0493 Lal-Chr25 3460300 3463898 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal25g0493 22 456 C2H2 Transcription Factor Family AT2G01940 56.152 1.82e-148 429
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lal25g0493 zf-C2H2 0.0044 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal25g0493 25 3460300 3463898 Lal25g0493 25 3460300 3463898 ECH
Lal8g0489 8 3319854 3323164 Lal25g0493 25 3460300 3463898 LSH
Lal16g0919 16 6080436 6083912 Lal25g0493 25 3460300 3463898 PCT
Lal15g0902 15 6826515 6830260 Lal25g0493 25 3460300 3463898 PCT
Lal25g0493 25 3460300 3463898 Lal16g0919 16 6080436 6083912 PCT
Lal25g0493 25 3460300 3463898 Lal15g0902 15 6826515 6830260 PCT