Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal25g0466 ATGCCTATTGCCACTGAACAAATGAAATGGAGAAAACATAGAAACAGAAGCCAAAACATATCAGAAACTAATCAAATTCCAAACCCAAAAATCTCTTCCAGAATCCAACCCACTAGTTGCAAAACCACAATCTCCTCTCTCCTCCTCTCTACATTCTCCAACAACAACAACACCAAAGAAACCACACATAAGAAGAAAAAGAAGAACACCAAAATCAGCAACTTTTCTGCAACAACCTTCAGTGGGTTTGGTTGCAAGGCCAGTGCATCAAAGCATGTGTCAGTTCCAGCAATGATTAGATCCTCAGCAGATTTGGAAGATAATAATAATAATAATAAGAAGAAGAAGAAGAAGAAGAAGAGCAGAAAGAATAAACATAGAAGAAACAGTGACAAGAACAGTAACAATGATTCTAGTACTACTTCTGTTACATGTGTGGATTTTCAATATGTTTGGTGTGGCCCTGGAATTGGATTCTCAGTTGATACTGCTGTTGCTGCATCCTCTGTGGATTGTGCTGTGGCAATGAAGAATGTATCTGCAAGAAGGAATCTTGATGTAGAGAAGATAATAACACATAGGGAGCATCTATCTTATTTGAGAAGGAACACTGTAAACACAGAAAGTATCTCAATTCTGGATGAATATTCAGACATATTTACACCACTCCCTGGCTTAGAGTCTTTTGCCACTTCTAGATCCTATCCTCATCTTCTGCATCCTTCCTCTCATGGTCTTGATAAGATAATGATACTTCAAGGAAGACTACTAATGGAGGAACAATTGAATTCACATGACCAATTTAGAGACTGGAGACTTGATGTTGATAACATGTCATATGAGTATGTGACAACTTTTGATTGGATTGTGACACAAAAAGTGAGACAGCAACTACTTGAGTTGGGTGAGAAAATTGGTTATGTGAACACTGGACTTGAAGAGGATGAGATGAGACTCAACATAAGGAAACTTAAGCTTGTAATTTCAAATGTTACATCAAAGAATCAAATAGACAAAAAGTGCACCATTTGTCAAGAGGAGTATGAAGGAGGTGAAGAGTTGGGGAAGCTAAATTGTGAACACAAGTATCACTTTCAGTGTATAAAACAATGGCTTGTGCATAAAAATTTCTGTCCAATTTGCAAGCATGAAGTTGTGGTTAGACAAATGCAAAAGTCCTAA 1182 0.3731 MPIATEQMKWRKHRNRSQNISETNQIPNPKISSRIQPTSCKTTISSLLLSTFSNNNNTKETTHKKKKKNTKISNFSATTFSGFGCKASASKHVSVPAMIRSSADLEDNNNNNKKKKKKKKSRKNKHRRNSDKNSNNDSSTTSVTCVDFQYVWCGPGIGFSVDTAVAASSVDCAVAMKNVSARRNLDVEKIITHREHLSYLRRNTVNTESISILDEYSDIFTPLPGLESFATSRSYPHLLHPSSHGLDKIMILQGRLLMEEQLNSHDQFRDWRLDVDNMSYEYVTTFDWIVTQKVRQQLLELGEKIGYVNTGLEEDEMRLNIRKLKLVISNVTSKNQIDKKCTICQEEYEGGEELGKLNCEHKYHFQCIKQWLVHKNFCPICKHEVVVRQMQKS 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal25g0466 393 SMART ring_2 341 381 IPR001841 -
Lal25g0466 393 MobiDBLite consensus disorder prediction 1 36 - -
Lal25g0466 393 MobiDBLite consensus disorder prediction 101 141 - -
Lal25g0466 393 PANTHER C3HC4-TYPE RING ZINC FINGER PROTEIN 4 386 - -
Lal25g0466 393 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 4 386 IPR045191 GO:0061630
Lal25g0466 393 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 317 390 IPR013083 -
Lal25g0466 393 ProSiteProfiles Zinc finger RING-type profile. 341 382 IPR001841 -
Lal25g0466 393 SUPERFAMILY RING/U-box 340 387 - -
Lal25g0466 393 MobiDBLite consensus disorder prediction 113 129 - -
Lal25g0466 393 MobiDBLite consensus disorder prediction 19 36 - -
Lal25g0466 393 Pfam Ring finger domain 340 382 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal25g0466 Lal-Chr25 3224309 3228232 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal25g0466 11 286 C3H Transcription Factor Family AT1G73760 39.024 1.88e-36 132
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal25g0466 25 3224309 3228232 Lal25g0466 25 3224309 3228232 ECH
Lal8g0447 8 2978437 2983738 Lal25g0466 25 3224309 3228232 LSH
Lal25g0466 25 3224309 3228232 Lal10g0820 10 15860942 15867302 LSH