Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g1371 ATGTCTGAAGCAAAAGACCCAGCGATCAAGCTCTTCGGGAAGACTATTCCGGTGCCGGATATTCCCACCGGATCCAGTGACTTGTTGAAAACTCCAATTTCATCTTCTGGTGATGTTGATAAGAATCACGCTTCTTCTACCAACTCTTCAAATGGTGAAGAAGAAGAGAGTGAGATTGAGCAGGACACATTGGAAGAGAAACCAACCGATGATAGGAAGGAACATGTTACTCAATCATCGGAAGAGGTCACTAATCTAGATACAACCTCGAGATCAGGTGAAGAATCTGTTACTCCTTCCACTGAGAACGAGGCTATTGATACTACATTGAAAACTTCAAGAGCTGAAGAAGAACAGGGCGAGAATTCACAAGAAAAGACGCCGAAAAAGCCTGACAAAATACTGCCTTGCCTGCGCTGTGATAGCATGGACACCAAGTTCTGCTACTTCAACAATTACAATGTCAACCAACCACGTCATTTTTGCAAGAATTGCCAGAGGTATTGGACTGCTGGTGGGTCAGTGAGGAATTTGGCCGTTGGTGCTGGTCGCCGGAAGAACAAGAACTCCACCTCTCTTTTTCGCCAGATAACTGTCCCTGAAGCACCACTCCAGAATACTCAGTCAAATTGTGTCAACCATCCTTCTTTGAAATGTAATGGCACAGTCCTTACATTTGAGTCTGGTACACCCTTGTGTGAATCAATGGCATCTGTTCTGGACCTTGCCGATGAAGCAACCAACAGTTGCACAATAAATGGAGAAAAAGTAAATGATAATTCCGATAAATCTTCTGTTACATCAACAACGCCAATGGAAGAATGTTCAACCATCGATAAGCCCCAAGAACAAGTTGTGCAGAATTTTCAGGGCTTCCCACCTCAAGTTCCCTACTATCCTTGTGCCCCTTGGCCTTTCCAATGGAATGCAGCACAGTGGAGCACTCCCGTACCACCACCTAGCTTTTTCCCACCTGGGTTTACCATGCCATTCTATCCTGCAGCAGCTTATTGGGGTTGTACATTGCCGGAAGGAGCGTGGAACATGAACATCCCATGGCTAGCAAAACCATCATCACCGGCCGTTAACTCTGGTCCCGACTCCCCAACCTTGGGTAAACATTCAAGGGAAGAAAACAGGGTCAAATCAAATGATGCCGTAGACGATGATGAACATTGCAGAGGAAATAATAAAGGAAAAAGACTTTGGGTTCCGAAAACATTAAGGATTGTTGACTTAGGAGAAGTAGCAAAAAGCTCTATATGGACAACTCTTGGGATTGAAAATGGTAAGGCAGACTCATTTTCTAGGGGAGGACTCCTTAAAGCATTCCCATCAAAGCAGGATGAGAAAAACCATCTACTTCAAAACTCACCAGTCTTGCAAGCCAATCCAGCAGCATTGTCTAGGTCGATCAACTTTCACGAGTCGTCATAA 1437 0.4468 MSEAKDPAIKLFGKTIPVPDIPTGSSDLLKTPISSSGDVDKNHASSTNSSNGEEEESEIEQDTLEEKPTDDRKEHVTQSSEEVTNLDTTSRSGEESVTPSTENEAIDTTLKTSRAEEEQGENSQEKTPKKPDKILPCLRCDSMDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGSVRNLAVGAGRRKNKNSTSLFRQITVPEAPLQNTQSNCVNHPSLKCNGTVLTFESGTPLCESMASVLDLADEATNSCTINGEKVNDNSDKSSVTSTTPMEECSTIDKPQEQVVQNFQGFPPQVPYYPCAPWPFQWNAAQWSTPVPPPSFFPPGFTMPFYPAAAYWGCTLPEGAWNMNIPWLAKPSSPAVNSGPDSPTLGKHSREENRVKSNDAVDDDEHCRGNNKGKRLWVPKTLRIVDLGEVAKSSIWTTLGIENGKADSFSRGGLLKAFPSKQDEKNHLLQNSPVLQANPAALSRSINFHESS 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g1371 478 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN 1 477 - -
Lal24g1371 478 MobiDBLite consensus disorder prediction 358 398 - -
Lal24g1371 478 ProSiteProfiles Zinc finger Dof-type profile. 135 189 IPR003851 GO:0003677|GO:0006355
Lal24g1371 478 PANTHER CYCLIC DOF FACTOR 2 1 477 IPR045174 GO:0003700|GO:0006355
Lal24g1371 478 MobiDBLite consensus disorder prediction 1 133 - -
Lal24g1371 478 MobiDBLite consensus disorder prediction 109 133 - -
Lal24g1371 478 MobiDBLite consensus disorder prediction 27 52 - -
Lal24g1371 478 ProSitePatterns Zinc finger Dof-type signature. 137 173 IPR003851 GO:0003677|GO:0006355
Lal24g1371 478 MobiDBLite consensus disorder prediction 65 80 - -
Lal24g1371 478 MobiDBLite consensus disorder prediction 371 398 - -
Lal24g1371 478 Pfam Dof domain, zinc finger 133 189 IPR003851 GO:0003677|GO:0006355
Lal24g1371 478 MobiDBLite consensus disorder prediction 81 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g1371 Lal-Chr24 15003274 15007675 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal24g1371 6 478 C2C2-Dof Transcription Factor Family AT5G39660 41.782 4.10e-97 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lal24g1371 zf-Dof 2.9e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal24g1371 - - aprc:113862693 606.675
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal24g1371 24 15003274 15007675 Lal7g1385 7 18889309 18891934 ECH
Lal24g1371 24 15003274 15007675 Lal17g1035 17 8707313 8710972 ECH
Lal24g1371 24 15003274 15007675 Lal24g1371 24 15003274 15007675 ECH
Lal22g0743 22 5329464 5335579 Lal24g1371 24 15003274 15007675 ECH