Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g0597 ATGGATACTACTCAGTGGCCACAGGAGATGGTGGTGAAACCAATAGAAGAGATAGTAGTGACAAAGGCTGCAACAACATCATTGGAAAGAAAACCAATGACACAGAAAGAACAAGCCCTAAACTGTCCAAGGTGTGATTCCACTAACACAAAGTTCTGTTACTACAACAACTACAGTCTCACACAACCAAGATATTTCTGCAAAGCTTGTAGAAGGTACTGGACTGAAGGTGGGACCCTCAGAAACATCCCTGTAGGAGGTGGATCAAGAAAGAACAAGAGATCTTCTACTTCTCTTTCTTCAGCTTCCTCTAATAAGAAAGTTTCAGATCTACTCACACCTCAAAACCCTAATGTTCATGATGGCCATGATCTAAACTTGGCTTTCAGAAATAACAACAATACTAGTGTATCTGCTTCAGCTTCTTCTACTATTACTACTGCACCTTCCACTTCTCATCTTTCAGTATTGGAGCTTCTTACTGGAATTACTTCATCAGGTTCAAGAGGTTTGATGAGTTCTTTCATACCTATGCATGCTCCAGTTTTAGGAGATTCAAATTCAGTTTACACTTGTGGGTTTCCTATGCAAGATTGGATTGGAAACCTTAATGGTAATGTTCAAGAGACAAGTGGGAGGCTTTTGTTTCCTTTAGAGGATTCAAAACAAGTTGCTAGCACCAACAACACTACAATAATAATGGATCATAATAATAGTAAGGAGCAACAACATGGTGATTCAAATGGTGGGTATTGGACTGGAATGTTAGGAGGAGGATCATGTTCAGGATTTAGCATTGTCTTCAATGTACAGTATGAACATAAGGACATGGCAAGACAAATTATTCAACTTACTTGA 858 0.3904 MDTTQWPQEMVVKPIEEIVVTKAATTSLERKPMTQKEQALNCPRCDSTNTKFCYYNNYSLTQPRYFCKACRRYWTEGGTLRNIPVGGGSRKNKRSSTSLSSASSNKKVSDLLTPQNPNVHDGHDLNLAFRNNNNTSVSASASSTITTAPSTSHLSVLELLTGITSSGSRGLMSSFIPMHAPVLGDSNSVYTCGFPMQDWIGNLNGNVQETSGRLLFPLEDSKQVASTNNTTIIMDHNNSKEQQHGDSNGGYWTGMLGGGSCSGFSIVFNVQYEHKDMARQIIQLT 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g0597 285 ProSiteProfiles Zinc finger Dof-type profile. 40 94 IPR003851 GO:0003677|GO:0006355
Lal24g0597 285 Pfam Dof domain, zinc finger 38 94 IPR003851 GO:0003677|GO:0006355
Lal24g0597 285 MobiDBLite consensus disorder prediction 81 117 - -
Lal24g0597 285 PANTHER DOF ZINC FINGER PROTEIN DOF1.8 1 257 - -
Lal24g0597 285 ProSitePatterns Zinc finger Dof-type signature. 42 78 IPR003851 GO:0003677|GO:0006355
Lal24g0597 285 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 1 257 IPR045174 GO:0003700|GO:0006355
Lal24g0597 285 MobiDBLite consensus disorder prediction 89 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g0597 Lal-Chr24 4341759 4346828 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal24g0597 1 260 C2C2-Dof Transcription Factor Family AT4G24060 37.644 3.91e-56 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lal24g0597 zf-Dof 7.8e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal24g0597 - - gmx:100782268 273.478