Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g1294 ATGGGAACAAATGGAAGCAAGTGCTCCGGAAAGGATGATTTCTTTGCGGCTGGAAGGAGCAATCTTTATGTGCCTCAGACTATACAAGTGAGCACGACCCGGCTTAAGCGGAGTCAGGCCCGCAGTAACCCACCAATCCTTCGTATGTTCTCTGAACGATCTTCTGTGCTAAAACTAAGATCACGAACAACAGAGAAATCGAAAATGAAGTTCAACCCAAGGGTTTCAAGTAGCCGCCGCAAGAGCCGCAAGGCTCATTTCACGGCACCGTCGAGTGTTCGCCGCGTTCTGATGAGCGCTCCTCTCTCCGGCGACCTCAGATCCAAGTACAATGTTCGGTCCATACCAGTGCGTAAGGAAGACGAGGTGCAAGTTGTTAGGGGAACCTATAAAGGGAGAGAGGGAAAGGTTGTTCAAGTTTATCGTCGCAAATGGGTGATCCATATAGAGCGGATAACCCGAGAGAAGGTAAACGGGTCAACCGTTAATGTTGGGGTCCACCCTTCGAAAGTTGTGATAACGAAACTTCGTTTAGATAAGGATCGCAAGTCGTTGCTGGATCGTAAGGCGAAGGGTCGTGCCGCTTCTGATAAAGAAAAGGGTACTAAGTTCGCACCCGAGGATGTTATGCAAACTATTGATTAG 645 0.4884 MGTNGSKCSGKDDFFAAGRSNLYVPQTIQVSTTRLKRSQARSNPPILRMFSERSSVLKLRSRTTEKSKMKFNPRVSSSRRKSRKAHFTAPSSVRRVLMSAPLSGDLRSKYNVRSIPVRKEDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGVHPSKVVITKLRLDKDRKSLLDRKAKGRAASDKEKGTKFAPEDVMQTID 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g1294 214 PANTHER 60S RIBOSOMAL PROTEIN L26-1 69 214 - -
Lal23g1294 214 MobiDBLite consensus disorder prediction 187 214 - -
Lal23g1294 214 ProSitePatterns Ribosomal protein L24 signature. 120 137 IPR005825 GO:0003735|GO:0005840|GO:0006412
Lal23g1294 214 SMART kow_9 116 143 IPR005824 -
Lal23g1294 214 MobiDBLite consensus disorder prediction 73 88 - -
Lal23g1294 214 Hamap 50S ribosomal protein L24 [rplX]. 67 189 IPR005756 GO:0003735|GO:0006412|GO:0015934
Lal23g1294 214 MobiDBLite consensus disorder prediction 61 88 - -
Lal23g1294 214 Gene3D - 69 211 IPR014722 -
Lal23g1294 214 SUPERFAMILY Translation proteins SH3-like domain 76 193 IPR008991 -
Lal23g1294 214 Pfam Ribosomal proteins L26 eukaryotic, L24P archaeal 76 189 IPR005756 GO:0003735|GO:0006412|GO:0015934
Lal23g1294 214 TIGRFAM rplX_A_E: ribosomal protein uL24 76 190 IPR005756 GO:0003735|GO:0006412|GO:0015934
Lal23g1294 214 MobiDBLite consensus disorder prediction 187 205 - -
Lal23g1294 214 CDD KOW_RPL26 121 173 IPR041988 GO:0003723
Lal23g1294 214 PANTHER 60S RIBOSOMAL PROTEIN L26 FAMILY MEMBER 69 214 IPR005756 GO:0003735|GO:0006412|GO:0015934
Lal23g1294 214 Pfam KOW motif 121 150 IPR005824 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g1294 Lal-Chr23 13946114 13950044 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g1294 69 214 Cytoplasmic Ribosomal Protein Gene Family AT3G49910 84.932 1.32e-90 261
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g1294 23 13946114 13950044 Lal23g1294 23 13946114 13950044 ECH
Lal16g0751 16 4853965 4855203 Lal23g1294 23 13946114 13950044 LSH
Lal15g0720 15 5022333 5027064 Lal23g1294 23 13946114 13950044 LSH