Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g1089 ATGATGATGTCACAACATGAAAGATCTCCAAAAGAAGCAGCAACAACCAAAGAACACCATGAGAATAATAATCAACAGTATTCTAATTCTGGTAGCAAGAAAAATGGCACCAGCACAACAAGGCCACAAGAACAAAGCCTAAAGTGTCCACGATGTGACTCACCGAACACCAAGTTCTGCTACTACAATAACTACAGCCTTACACAGCCAAGACACTTCTGCAAAACATGTAGAAGATATTGGACAAAAGGTGGCGCTTTGCGTAACGTTCCTATAGGTGGAGGGTGCAGGAAGAACAAAAAGGTTAAGTCTTCAAGGCTCTCATGTGATTCCAAAGACTCTGGTGGTGGTACTTCCTCTTTAGAACATCACCATCACCTTGGTGGTGGCCTCAAGTTCCTTCATTCTCTTTCATCACCTCCTATTCATGATTTTCAACTTGGTGGTTTAACTTTACCATTCCTTCATAACCCTCCAATTCCAACCACTAATTCCATATACAACAACCAATTCTCTTCTTTTGGAGATGGTTCTGTCACAAATGCTCCAAGTTTTAATCTCGACCCTTCTTCTGGTACCACCACCCCAAGTTCTTCAAATTTGCTTGGTCTGAATTACCCATTTAATGGTACAAATGCTGCAAATGCAATACACGGTATGAGTTCAATGAACCTTCATAACCCCAACCTTGCTTCCTCCATTGAGTCCTTGAGTTCTATGAACCAGGACTTGCACTGGAAGCTTCAGCAGCAAAGGTTGTCTATGCTGTTTGGAGGAGATAACCAGAAAGATGGTAGTAACCTTGAGATTAGCCAGACCCAGAGGCCTCAACCCATTTTGTTTCAGAACCTTGAGGTTTCAAATCCAGAGACTTTCCCTATTGGGGGTTCAAGAAAAGAAGGCCCAAGTGGTGGTGGTGGTGATATACCAACTGAGTGGTTCTTTGGGAATTCTTATGCATCAGTGACAACAAAAACTGCTACACCAACTACTAGTGGTGGTGGACATGGCCATGGAAACGATAATGGTAACAACTGGAATGGCAATATTCATGCTTGGGGTGATGTCAATGTGCAGCAGCATTATAGTTCTTTGCCCTAG 1101 0.4278 MMMSQHERSPKEAATTKEHHENNNQQYSNSGSKKNGTSTTRPQEQSLKCPRCDSPNTKFCYYNNYSLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKKVKSSRLSCDSKDSGGGTSSLEHHHHLGGGLKFLHSLSSPPIHDFQLGGLTLPFLHNPPIPTTNSIYNNQFSSFGDGSVTNAPSFNLDPSSGTTTPSSSNLLGLNYPFNGTNAANAIHGMSSMNLHNPNLASSIESLSSMNQDLHWKLQQQRLSMLFGGDNQKDGSNLEISQTQRPQPILFQNLEVSNPETFPIGGSRKEGPSGGGGDIPTEWFFGNSYASVTTKTATPTTSGGGHGHGNDNGNNWNGNIHAWGDVNVQQHYSSLP 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g1089 366 ProSiteProfiles Zinc finger Dof-type profile. 47 101 IPR003851 GO:0003677|GO:0006355
Lal23g1089 366 Pfam Dof domain, zinc finger 45 101 IPR003851 GO:0003677|GO:0006355
Lal23g1089 366 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 26 366 IPR045174 GO:0003700|GO:0006355
Lal23g1089 366 MobiDBLite consensus disorder prediction 20 48 - -
Lal23g1089 366 MobiDBLite consensus disorder prediction 1 48 - -
Lal23g1089 366 ProSitePatterns Zinc finger Dof-type signature. 49 85 IPR003851 GO:0003677|GO:0006355
Lal23g1089 366 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN-RELATED 26 366 - -
Lal23g1089 366 MobiDBLite consensus disorder prediction 325 348 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g1089 Lal-Chr23 12544956 12546056 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g1089 3 366 C2C2-Dof Transcription Factor Family AT5G65590 38.736 1.46e-67 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lal23g1089 zf-Dof 9.3e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g1089 - - gmx:100780729 381.719
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0483 16 3032394 3034451 Lal23g1089 23 12544956 12546056 LSH
Lal15g0428 15 2930078 2931055 Lal23g1089 23 12544956 12546056 LSH