Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g0978 ATGGGTCATGGAGACTTCATCGGAGAATCCAAACCCGACCAGGACTTGCCGGAACGACCTACCGGAATCTCCAAACTCCGGCGGACAATCGATTTCATCTCATCGCTGATCTCCCTTTCTCTCTCGGTCAGAGTATTCACCGGAAAATGGCAACTCATTCGTAACAAACTGGAGGAGCTTCACTCCGGCCTCATTGCGGCCGAGAACTTCGATTCCGGCGAAAACCCATCACTCTCAGGCGTGGTCCCTTCGATAATGGCCACAATTAGCGAGTGCTATGATCTTGCGACACGGTGCGTTGATCTTTCTTATAGTGGGAAGCTTCTTATGCAGAGCGATTTGGATATGGTTTTCGCAAAGTTCGATAACCACGTGAAGAAGCTAGCTGAGATTTACAAGAAGGGTATTTGGTCGAATGGGTATGCGTTGGTTGTGTCAAAACCGAGTCTTGGCGCTTCTAAAGAGGATATGAGGTTTTACATAAGGGACTTGTTGAGTAGAATGAAGATTGGTGATTTGGGTATGAAGAAACAGGCTTTGATGAACTTATATGATGTTGTGGTTGAGGATGAGAAGTATGTTAAAGTGATTATTGATGTTGGTGATGTTGTTCATGTTTTGGTGGGCTTTTTATGTTCCAATCAGGTAACAGTCCAAGAAGCAAGTGCTCAGGTTGTTTCTGTTATTGCGGGTTTTGATTCGTATAAAGGGGTTTTGGTTTCTGCAGGGGTTATTGCACCTTTGGTCAAGGTTTTGGATTTTGGGAGTGAGGCAGGGAAAGTTGATGCTGCAAGGTGTTTGATGAAATTGACTGAGAATTCGGATAATGCTTGGTGTGTTTCAGCGCATGGGGGTGTCACTGTCTTGTTGAAGATTTGTGGTGATGAAGATTGTAAACGTGATTTGGTTGGTTTGGCTTGTGGGGTGTTGAGGAATCTTGTTGGTGTTGAAGAGATAAAGAGGTTTATGGTTGAGGAGAGTGCTGTGTCCACTTTTATTAGGCTTCTGAGGTCCAAGGAGGAAGTAATTCTGGTGAAGTCTATAGGGTTCATTCAGAGTATTGCCACTGGTGACGACTTGGTTACGGAAATGTTGATTAGAGAAGGTGGCATCCATGCTTTGCTGTGTGTATTGGATCCTAAATGGTATTATTCTTCTAAGACAAGGGAGATTGCAATGAGGGCTGTTGAGAATTTGTGTTTTTCTTCATCTACTTGTGTAAGTATTTTGATGAGTTATGGTTTTGTGGATCAGCTGTTATATTATGTTAAAAATGGTGAGGTTTCAATTCAAGAGTTGTCACTGAAAGTGGCTTTTAGATTGTGTGGAACATCAGAGGAGGCTAAGAAAGCAATGGGTGATGCGGGTTTTATGGCTGAGCTTGTTAAGTTTCTAAGTGCAAAGTCATTTGAAGTTCGCGAAATGGCAGCTGAAGCACTCTCTAGCATGGTCATGGTACCCAAAAATAGAAAGAGATTTGTGCAGGATGACAATAATATTGCCCTTCTTCTGCAATTGCTGGACCCAGAGGAGGGAAATTCAGGTAACAGAAAGTTCTTAATCTCTATCTTAATGTCATTAACAAGTTGCACCAGTGGGAGAAAAAAGATAGTTAGTTCTGGTTATGCCAAAAACATTGAAAAACTTGCAGAGGCTGAAGTTTCTTCTGATGCCAAGAGACTTGTAAAGAAGCTTTCCGCAAACCGGTTCCGCAACATGTTGAGTGGAATCTGGCACTCATGA 1743 0.4286 MGHGDFIGESKPDQDLPERPTGISKLRRTIDFISSLISLSLSVRVFTGKWQLIRNKLEELHSGLIAAENFDSGENPSLSGVVPSIMATISECYDLATRCVDLSYSGKLLMQSDLDMVFAKFDNHVKKLAEIYKKGIWSNGYALVVSKPSLGASKEDMRFYIRDLLSRMKIGDLGMKKQALMNLYDVVVEDEKYVKVIIDVGDVVHVLVGFLCSNQVTVQEASAQVVSVIAGFDSYKGVLVSAGVIAPLVKVLDFGSEAGKVDAARCLMKLTENSDNAWCVSAHGGVTVLLKICGDEDCKRDLVGLACGVLRNLVGVEEIKRFMVEESAVSTFIRLLRSKEEVILVKSIGFIQSIATGDDLVTEMLIREGGIHALLCVLDPKWYYSSKTREIAMRAVENLCFSSSTCVSILMSYGFVDQLLYYVKNGEVSIQELSLKVAFRLCGTSEEAKKAMGDAGFMAELVKFLSAKSFEVREMAAEALSSMVMVPKNRKRFVQDDNNIALLLQLLDPEEGNSGNRKFLISILMSLTSCTSGRKKIVSSGYAKNIEKLAEAEVSSDAKRLVKKLSANRFRNMLSGIWHS 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g0978 580 Gene3D - 160 570 IPR011989 -
Lal23g0978 580 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 14 580 - -
Lal23g0978 580 MobiDBLite consensus disorder prediction 1 21 - -
Lal23g0978 580 SMART arm_5 190 231 IPR000225 GO:0005515
Lal23g0978 580 SMART arm_5 273 315 IPR000225 GO:0005515
Lal23g0978 580 SMART arm_5 358 401 IPR000225 GO:0005515
Lal23g0978 580 SMART arm_5 232 272 IPR000225 GO:0005515
Lal23g0978 580 SMART arm_5 445 485 IPR000225 GO:0005515
Lal23g0978 580 SMART arm_5 316 356 IPR000225 GO:0005515
Lal23g0978 580 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 14 580 - -
Lal23g0978 580 SUPERFAMILY ARM repeat 148 533 IPR016024 -
Lal23g0978 580 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 284 328 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g0978 Lal-Chr23 11771725 11773467 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g0978 172 377 U-box Gene Family AT2G23140 23.697 2.58e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g0978 - - gmx:100809382 867.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal15g0587 15 4065029 4066768 Lal23g0978 23 11771725 11773467 LSH
Lal23g0978 23 11771725 11773467 Lal5g1766 5 19683364 19685082 PCT
Lal23g0978 23 11771725 11773467 Lal11g0143 11 940970 942862 PCT
Lal5g1766 5 19683364 19685082 Lal23g0978 23 11771725 11773467 PCT
Lal11g0143 11 940970 942862 Lal23g0978 23 11771725 11773467 PCT