Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g0957 ATGGGCTTGAGTTCTGAGCAAGTTTCTAGCAGTGGAATTGATTGGAACAATAACTTAATGAAAGATCAAAAGTTAGAGCTTGTTCCAAAGCCTCATCATCATAATCAGATGAAGAAATCATCAGAGACTTTAAAGTGCCCAAGATGTGACTCAACAAACACCAAATTTTGTTACTACAATAACTACAACAAGTCTCAGCCTCGCCATTTCTGCAGAGCTTGCAAGAGGCACTGGACTAAAGGTGGAACTCTTAGAAATGTTCCTGTTGGTGGCGTTAGGAAGAATAAAAGGTTAAAAAAACCAACCACACCAAAAACAACAACCTCTTGCACCCTCACAACTTCTACTTCTATAATGGATGGTGTTTTGAGTAGCAACATGAACAATATTCAAACTTCTCTTGCAGTGAGTGATCAGAAAAACATGTCTTCCTCTTCACTCTATCAAGCAATGATTCGTCCACCATCTTTGCTGCTACAACAACAGAATCTGATGAATATGAGAGACTTAGAAAGTAAAGATTTTGTTATGACTATGAGTTCAACTTTGCCTCTTCATCAAAACCAAAGCTTACTTTTTCCTTTCTCAAACTCAAGCTCTTTTTACACAAACCCATGTTCAGTATCAACAACATCTTTAAGGTCACCATCCAATGTTTATAACTATGTGGTGGAATCAACCATCAACAGTGTAATACCAAGCACTAGTAGTAGTGGTATTAACACACATACATTGGAGATACCAGCAACAAGTGGTGGCATGGGAATGTCCAATTATTGGAGTTGGGAGGATATTGATTCATTTGTCTCAACTGATCTTAAGGATCCATGGGATGATTCTGATATCAAACCTTGA 855 0.3789 MGLSSEQVSSSGIDWNNNLMKDQKLELVPKPHHHNQMKKSSETLKCPRCDSTNTKFCYYNNYNKSQPRHFCRACKRHWTKGGTLRNVPVGGVRKNKRLKKPTTPKTTTSCTLTTSTSIMDGVLSSNMNNIQTSLAVSDQKNMSSSSLYQAMIRPPSLLLQQQNLMNMRDLESKDFVMTMSSTLPLHQNQSLLFPFSNSSSFYTNPCSVSTTSLRSPSNVYNYVVESTINSVIPSTSSSGINTHTLEIPATSGGMGMSNYWSWEDIDSFVSTDLKDPWDDSDIKP 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g0957 284 PANTHER OS06G0284500 PROTEIN 36 215 - -
Lal23g0957 284 ProSitePatterns Zinc finger Dof-type signature. 46 82 IPR003851 GO:0003677|GO:0006355
Lal23g0957 284 Pfam Dof domain, zinc finger 43 96 IPR003851 GO:0003677|GO:0006355
Lal23g0957 284 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 36 215 IPR045174 GO:0003700|GO:0006355
Lal23g0957 284 ProSiteProfiles Zinc finger Dof-type profile. 44 98 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g0957 Lal-Chr23 11639825 11640679 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g0957 44 101 C2C2-Dof Transcription Factor Family AT1G28310 83.051 4.00e-31 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lal23g0957 zf-Dof 2.1e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g0957 - - gmx:100818111 316.235
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal15g0600 15 4170051 4170907 Lal23g0957 23 11639825 11640679 LSH
Lal23g0957 23 11639825 11640679 Lal5g1750 5 19528627 19531253 PCT
Lal23g0957 23 11639825 11640679 Lal3g0078 3 469391 470221 PCT
Lal5g1750 5 19528627 19531253 Lal23g0957 23 11639825 11640679 PCT
Lal3g0078 3 469391 470221 Lal23g0957 23 11639825 11640679 PCT