Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g0940 ATGGAGCAAGAAATAGGAGGTGGAGGAGGAGACATGAACCAACAACCTCAGAATCAGCCTCCACCACCACCACAACCACCACAGCAATGTCCACGTTGCGACTCTATGAACACCAAGTTCTGCTATTACAACAATTATAGCCTGTCGCAGCCTCGATACTTCTGCAAAACCTGCAAGAGGTATTGGACACAAGGTGGAACACTGAGGAACATACCTATTGGTGGCTCTTCCCGTAAAGGGAAGCGCTCTAAGTATGCTTCATCATCGCAACCACAACTACCACCACAACCACAAACTCGATCACAGCGAGTAACACATGAAGTGCTCCAACTCCCAAACCAGCCCAACTTGACAACTTTTATGAGGCCTACTCCACCTACGGTGGTTCAGCCAACTAATCCTTATTACCAAGGTGGTGGCGGTATTGGTGGCGGTGGTGGATATTTTTCTTCTATGGCTGCAGTTCACTCAATGAACCCACCACCACAGCCTTTGGATCAGGCTCTGAATGGCGTGGGATCTTCAAATTCTGGTCTTTTATCTGGCTTCAACACTGCTGTTTCTGGTTCTCTTGGCTCACAACCCTACCACCCTGGCCAAATTCACCCACAGCAATTCTATCCAGAACATGGTTTCAATTATCCATCAAACATGGCTAATCATAGGGCACCTGATACTTCTCTGTGGAATGTTGCTAGCACCTCTTCTTCCACTAGTGGTAACACTCAGAACAATACTAGAGGTGCTGGATCTTCTTCTGTGATCCCAAATCATTGGCCTAATCTTCCTGGAAATGGCTCTCATTATCAGTAA 813 0.4699 MEQEIGGGGGDMNQQPQNQPPPPPQPPQQCPRCDSMNTKFCYYNNYSLSQPRYFCKTCKRYWTQGGTLRNIPIGGSSRKGKRSKYASSSQPQLPPQPQTRSQRVTHEVLQLPNQPNLTTFMRPTPPTVVQPTNPYYQGGGGIGGGGGYFSSMAAVHSMNPPPQPLDQALNGVGSSNSGLLSGFNTAVSGSLGSQPYHPGQIHPQQFYPEHGFNYPSNMANHRAPDTSLWNVASTSSSTSGNTQNNTRGAGSSSVIPNHWPNLPGNGSHYQ 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g0940 270 MobiDBLite consensus disorder prediction 72 104 - -
Lal23g0940 270 MobiDBLite consensus disorder prediction 230 270 - -
Lal23g0940 270 MobiDBLite consensus disorder prediction 81 104 - -
Lal23g0940 270 Pfam Dof domain, zinc finger 27 82 IPR003851 GO:0003677|GO:0006355
Lal23g0940 270 MobiDBLite consensus disorder prediction 1 31 - -
Lal23g0940 270 ProSitePatterns Zinc finger Dof-type signature. 30 66 IPR003851 GO:0003677|GO:0006355
Lal23g0940 270 PANTHER DOF ZINC FINGER PROTEIN DOF5.4-LIKE ISOFORM X1 15 208 - -
Lal23g0940 270 ProSiteProfiles Zinc finger Dof-type profile. 28 82 IPR003851 GO:0003677|GO:0006355
Lal23g0940 270 MobiDBLite consensus disorder prediction 16 30 - -
Lal23g0940 270 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 15 208 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g0940 Lal-Chr23 11508257 11509069 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g0940 21 104 C2C2-Dof Transcription Factor Family AT5G60200 60.714 2.86e-34 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lal23g0940 zf-Dof 3.5e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g0940 - - lang:109334079 426.402
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g0940 23 11508257 11509069 Lal23g0940 23 11508257 11509069 ECH
Lal16g0680 16 4396717 4397679 Lal23g0940 23 11508257 11509069 LSH
Lal23g0940 23 11508257 11509069 Lal5g1724 5 19357738 19358694 PCT
Lal23g0940 23 11508257 11509069 Lal11g0196 11 1390331 1391209 PCT
Lal5g1724 5 19357738 19358694 Lal23g0940 23 11508257 11509069 PCT
Lal11g0196 11 1390331 1391209 Lal23g0940 23 11508257 11509069 PCT