Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g0939 ATGCTAAGTAACTGCGACAAAATTGGACACATCCTTCCACCAACAACTAATGAATGGACACAGATTCATAACATAGATGACCATCTGAAGAACTCGATGGCTTCTTCCACTGGTATTAGGGTTATGGAAAAACCAGGTCAAGATCTTCTTCAGCAGCAACAACAAGCACTCAAGTGCCCTCGTTGTGACTCATCAAACACAAAGTTCTGTTACTACAACAACTACAGCCTCTCACAGCCACGCCACTTCTGCAAAGCTTGCAAACGTTACTGGACAAGAGGTGGAACTCTCAGAAACGTTCCTGTGGGTGGTGGCTGTAGAAAAAACAAGCGTGTCAAGCGTCCAAATATTGATACTACCGCTCCTTCTTCTCCTCTTTCTTCAAATTCAAACCCTCCCAATAATAAAATTGCTAGTTCAACCGCAAATCATGTCAACCCTTTGTTGTATGGGTTACCTAGTAACTCTGGTGATGTCATGAGTACTCTTCAATTCCCAAGGTTCAGTTCTGGGTATAATCTTCATCCTCAGATGAATAACCTTGGATTAGATTTTTCATCTGAGGTTATGTCTGCTGACAATAATGGTTACAGAAATGGGTTTATTTCAAGTAACAACAACACTCTTGTTTCTACTTATAGCTCCATCTTTGGTTCTTCTTCAACTTCTACACCCTCTACTCCAGCTATGGCTTCCCTATTACTGCAACAGAAATTCATGAATGGTGGAGTGAAAGATGGTCCTGAAGGTTTCAACAATTTCCAGGGGTTAATACCTGTTGAAGGGTTGCAAATGGGAGGTAATGATAACTGTAATGGAGGGGTGATGGGTTCTTCAAAAGAAGTAAAAGGTGAAGGACAAAACAGGATGGAGTGGAATATGAATGGTGCTTCTTGCCAAAACCAGATGGAGCAACCTATGGGTTTGTTGTCCCATGATCCTTCACTTTATTGGAACACAGCAACAGCTATGGGTGCTTGGGGTGATCAGCCAAATATAAATCCTTCAGTTAGTTCTCTGATCTAG 1026 0.4172 MLSNCDKIGHILPPTTNEWTQIHNIDDHLKNSMASSTGIRVMEKPGQDLLQQQQQALKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRVKRPNIDTTAPSSPLSSNSNPPNNKIASSTANHVNPLLYGLPSNSGDVMSTLQFPRFSSGYNLHPQMNNLGLDFSSEVMSADNNGYRNGFISSNNNTLVSTYSSIFGSSSTSTPSTPAMASLLLQQKFMNGGVKDGPEGFNNFQGLIPVEGLQMGGNDNCNGGVMGSSKEVKGEGQNRMEWNMNGASCQNQMEQPMGLLSHDPSLYWNTATAMGAWGDQPNINPSVSSLI 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g0939 341 MobiDBLite consensus disorder prediction 102 140 - -
Lal23g0939 341 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 2 327 IPR045174 GO:0003700|GO:0006355
Lal23g0939 341 Pfam Dof domain, zinc finger 55 111 IPR003851 GO:0003677|GO:0006355
Lal23g0939 341 ProSiteProfiles Zinc finger Dof-type profile. 57 111 IPR003851 GO:0003677|GO:0006355
Lal23g0939 341 MobiDBLite consensus disorder prediction 116 140 - -
Lal23g0939 341 ProSitePatterns Zinc finger Dof-type signature. 59 95 IPR003851 GO:0003677|GO:0006355
Lal23g0939 341 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-LIKE 2 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g0939 Lal-Chr23 11500999 11503102 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g0939 57 152 C2C2-Dof Transcription Factor Family AT1G28310 71.000 9.31e-37 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lal23g0939 zf-Dof 1.7e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g0939 - - gmx:778105 340.502
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g0939 23 11500999 11503102 Lal23g0939 23 11500999 11503102 ECH
Lal15g0633 15 4360815 4361714 Lal23g0939 23 11500999 11503102 LSH
Lal23g0939 23 11500999 11503102 Lal11g0197 11 1396375 1397686 PCT
Lal11g0197 11 1396375 1397686 Lal23g0939 23 11500999 11503102 PCT