Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g0871 ATGAGGAAGCCTAATTGCCATGACATGAACAAAGAAGCTTGGTCCCAACAAGAAGACCAGAAACTCACAGATTATATCCAAAAACATGGCGAAGTTTGTTGGACTACTCTCCCTCAAGCTGCAGGTTTACTTCGGTGTGGTAGAAGTTGTAGGCAGAGATGGACAAACTATCTACGACCAGACGTTAAAAGAGGCAACTTTGGTGAAGACGAAGAAGATCTCATCATAAAGCTTCATGCACTGCTCGGCAACCGGTGGTCACTAATAGCAGGTAGATTACCGGGACGGACAAATAATGAAGTGAAGAACTATTGGAACTTCCATATAAGAAGAAAGCTCATTAGCAATGGTATTGATCCAAATAATCATCGTTTAAGCCAGAATGTTCTTCCCCTTCAAAACTCATCTATGTGTGGTAGTTCAAAATCATGTATCTTAGAAGACAATAATTGCAAGAGTAAACCAATTAAACCTCACGTTGAACATTATGGTCAAGACTCAGATACTGCTAGCTGCGAGGAAGTTGAATCATATGCCTTACCGGATTTAAACCTTGATCTCTCACTATGA 570 0.4053 MRKPNCHDMNKEAWSQQEDQKLTDYIQKHGEVCWTTLPQAAGLLRCGRSCRQRWTNYLRPDVKRGNFGEDEEDLIIKLHALLGNRWSLIAGRLPGRTNNEVKNYWNFHIRRKLISNGIDPNNHRLSQNVLPLQNSSMCGSSKSCILEDNNCKSKPIKPHVEHYGQDSDTASCEEVESYALPDLNLDLSL 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g0871 189 Pfam Myb-like DNA-binding domain 64 106 IPR001005 -
Lal23g0871 189 Pfam Myb-like DNA-binding domain 11 58 IPR001005 -
Lal23g0871 189 Gene3D - 3 64 - -
Lal23g0871 189 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 2 188 - -
Lal23g0871 189 SUPERFAMILY Homeodomain-like 8 105 IPR009057 -
Lal23g0871 189 PANTHER MYB-LIKE TRANSCRIPTIONAL FACTOR MYB76 2 188 - -
Lal23g0871 189 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 58 IPR017930 -
Lal23g0871 189 SMART sant 10 60 IPR001005 -
Lal23g0871 189 SMART sant 63 111 IPR001005 -
Lal23g0871 189 Gene3D - 66 129 - -
Lal23g0871 189 CDD SANT 66 106 IPR001005 -
Lal23g0871 189 ProSiteProfiles Myb-like domain profile. 6 58 IPR001005 -
Lal23g0871 189 ProSiteProfiles Myb-like domain profile. 59 109 IPR001005 -
Lal23g0871 189 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 59 113 IPR017930 -
Lal23g0871 189 CDD SANT 13 58 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g0871 Lal-Chr23 11048900 11051785 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g0871 2 189 MYB Transcription Factor Family AT4G09460 51.244 1.11e-65 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lal23g0871 Myb_DNA-binding 3.4e-12 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g0871 23 11048900 11051785 Lal23g0871 23 11048900 11051785 ECH
Lal23g0871 23 11048900 11051785 Lal18g1318 18 15665318 15667057 ECH