Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g0869 ATGGATGATGAAGTTGTTCAACGAGTTTTCCATGAAGGAGGTCGCGATTACTTTCAACAACAACCTTCAACTTCTTCATCTTCTTCTATCCTCCAATCTCTCCCTCTTCATGTGTCTTTTGATCATGGCTATTATTTGTTGGTAAAATCTATACAAGAACTTCGAGAGAAAAAGGAGGGCCTTGTCACAGTTGGCATTGGTGGTCCAAGTGGTTCGGGTAAAACAAGCTTAGCAGAAAAGGTGGCATCTGTTATTGGTTGTACTGTTATATCAATGGAGAATTATCGTGATGGAGTTGATGAAGGAAATGATCTGGTTTCTATAGATTTTGATACTCTGATCAAGAATCTTGAGGATTTGACTGAAGGCAATGACACTTCAATCCTGGTGTTTGACGATCCGCAAAAGAGACGTGTTGGCTATAAAGCAATAAAGAGTGCATCATCTGGGGTGGTAATAGTTGATGGTACATATGCTTTGCATGCTAAACTGCGCTCTTTATTGGATATTCGAGTTGCTGTGGTTGGTGGTGTTCATTTTAGCCTGCTTTCTAAAGTTCGCTATGACATTGGGGATTCTTGTTCACTGGATTACCTTATAGATAGCATTTTTCCATTATTTAGGAAGCACATTGAGCCGGATCTTCATCATGCACAGATCAGAATCAATAACAGCTTTGTGTCATCATTTAGAGAGGCAATCTACAAGGTTAAATGCAGAAGTGAGTCTCCGGACGAACATTCAAGTTCCGCCTTTAAGGGAAATGAAGCCCAAACAGATAATTTTATTGAAATGTACCTTAGACCGCCTTCGGCTAGTGAAGAAGCAAAGATAAATGATTGGATTAAAGTGCGGCAGTCTGGAATTAGATATTATTTATCACTTGGTGATCAGAGGATTGTGGACAAAAATTTCATTATCAGGCCTAAAGCAGAATTTGAGGGGCCCTTCAAGAGGTATGGTTGGTATTGCAGAATAGGAATTAGAATTGACCTTTGTCAACATATGGTTGTGGATATTGTGAGAATGACCATTGTGAATGATGGGAACAGGAGATATGCCACTGTATTCATTTCAAGTATGATGGGATGTATTTCTGTCAGGATGGAGGTTGGACGGATGACATTGGGTGGATTGTTGGCTCTTGGGTATACTGTTGTGGTTAGTTATAAACGTGCATCCACAACTATCAATAATGGCAAGGTTTCGATGTCTTATGAAACCATTGATGCTCTTAGTGAGACATTCATAGTGATGAGAGGAACTAATAGAAAGACTGTTGGAACAGAAGCATTGAGGATAGGTATAATTGGACCTTGGATTACTAAATCATACCTGGAAATGATTCTTGAGAGAAAAGGTGTACCTCGTCTTAGTACACCACCACTTGTCACAAGTGCATCTGTGACTGGTAGTCAAGAAACAACAATCATATCCCCAAAGCCAATTCGTGTCACTCCTGATTTTGTTACTGGTCTCGAGGATCTATCTCAGCCATGGACTCGATCTCCAACAAAATCTAAAATGGAACCTGTTGTGGCAATGTGGCAATTCATATCTTCAGATTCCTCCCAGCCTGACAACTCAGTCCTAGAGTTCTCTCATGAAGCAACCACAGATCCTTCATCTTTCAGGGATGCCATTAGGCTTGCTCCAATGCCTGATTCATATGACTTGGATAGGGGATTGCTTTTGGCAATTCAAGCAATACAAGCTTTGTTGGAGAATAAAGGTGTCCCAGTCATAGTTGGAATTGGTGGTCCAAGCGGGTCTGGGAAGACTAGTTTGGCTCATAAAATGGCCAATATCATTGGTTGTGAAGTAGTTTCCCTGGAAAACTATTACATACAAGTAAAGGATTTTAAGTATGATGACTTCAGCTCACTTGATTTATCTCTGCTATCAAAGAATATTGATGACATAAGAAATGGCCGAAGAACAAAAGTACCTATATTTGACCTGGAAAGTGGTGCTCGGAGTGGCTTCAAGGAACTTGAAGTTTCTGAAGATTGTGGAGTGATTATCTTTGAAGGTGTCTATGCTTTGCATCCTGATATCCGAATATCACTTGACTTGTGGATTGCTGTTGTGGGAGGTGTTCATTCACATTTGATTTCACGAGTTCAAAGGGATAAGAGTAGAGTGGGATGTTTTTTTGCCCAAAATGAGATCACAACGACTGTGTTTCCTATGTTCCAGCAACACATTGAACCTCATCTAGTTCATGCACATCTTAAAATTCGAAACGACTTTGACCCTGTGCTTTCTCCTGAGAGTTCATTGTTTGTATTGAAGAGTAATGAGAAAGTAGCTTATGAAGATATTCTTGCAATTCTTGATCCAGCAAAATTTTGCAGTTCAGTCCAGAAATTTATTGATATTTATATAAGGCTTCCTGGGATCCCTTCTAATGGGAAGTTGACAGATAGTGATTGTATTCGAGTGAGAATATGTGAAGGCAGATTTGCATTGCTGATACGTGAGCCTATTAGGGAAGGGAACTTCATCATTCAGCCTAAAGTGGATTTTGATATTAGCATTAGTACAGTAGCTGGTCTTCTTAACCTTGGGTATCAAGCAGTTGCTTATATTGAAGCGTCTGCATTCATCTATCAGGATGGAAAGATTTTGATTGAGGTCGATCATCTACAAGACGTATCTGGCCCATACATTCAGATCAAGGGAGTTGATAAAGATGCAGTGGCGGCAGCTGGTTCAATGCTTAAATTGGATGGTTCATATACTACCAAGAGTTATCTTGAAATAGTTTTGGAAGGACTTCCAGCAACAGAAGGAACTTCTGGTGGGATTCACTCTCAACAATCATCAAGGCTGCTAGAAATTGTTGAATTTATTCAATCTCAGGGATGTAGCACTGCTTCAGAATCCTCATCAAATAGGGTGGTCCCTCCAATTGAAGGGATTATTGAGGAGATGCAATCCAGGATTAGAAGGCTTGAAAAGTGGCTTGCTATAAATACGGTTCTATGGACATTTCTAGTGTCTGCCCTAGTTGGCTATTCACTGTATCAAAGGAGGCGTCAATGA 3048 0.4012 MDDEVVQRVFHEGGRDYFQQQPSTSSSSSILQSLPLHVSFDHGYYLLVKSIQELREKKEGLVTVGIGGPSGSGKTSLAEKVASVIGCTVISMENYRDGVDEGNDLVSIDFDTLIKNLEDLTEGNDTSILVFDDPQKRRVGYKAIKSASSGVVIVDGTYALHAKLRSLLDIRVAVVGGVHFSLLSKVRYDIGDSCSLDYLIDSIFPLFRKHIEPDLHHAQIRINNSFVSSFREAIYKVKCRSESPDEHSSSAFKGNEAQTDNFIEMYLRPPSASEEAKINDWIKVRQSGIRYYLSLGDQRIVDKNFIIRPKAEFEGPFKRYGWYCRIGIRIDLCQHMVVDIVRMTIVNDGNRRYATVFISSMMGCISVRMEVGRMTLGGLLALGYTVVVSYKRASTTINNGKVSMSYETIDALSETFIVMRGTNRKTVGTEALRIGIIGPWITKSYLEMILERKGVPRLSTPPLVTSASVTGSQETTIISPKPIRVTPDFVTGLEDLSQPWTRSPTKSKMEPVVAMWQFISSDSSQPDNSVLEFSHEATTDPSSFRDAIRLAPMPDSYDLDRGLLLAIQAIQALLENKGVPVIVGIGGPSGSGKTSLAHKMANIIGCEVVSLENYYIQVKDFKYDDFSSLDLSLLSKNIDDIRNGRRTKVPIFDLESGARSGFKELEVSEDCGVIIFEGVYALHPDIRISLDLWIAVVGGVHSHLISRVQRDKSRVGCFFAQNEITTTVFPMFQQHIEPHLVHAHLKIRNDFDPVLSPESSLFVLKSNEKVAYEDILAILDPAKFCSSVQKFIDIYIRLPGIPSNGKLTDSDCIRVRICEGRFALLIREPIREGNFIIQPKVDFDISISTVAGLLNLGYQAVAYIEASAFIYQDGKILIEVDHLQDVSGPYIQIKGVDKDAVAAAGSMLKLDGSYTTKSYLEIVLEGLPATEGTSGGIHSQQSSRLLEIVEFIQSQGCSTASESSSNRVVPPIEGIIEEMQSRIRRLEKWLAINTVLWTFLVSALVGYSLYQRRRQ 1015
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g0869 1015 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 553 667 - -
Lal23g0869 1015 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 2 314 - -
Lal23g0869 1015 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 667 1006 - -
Lal23g0869 1015 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 368 477 - -
Lal23g0869 1015 CDD UMPK_like 582 750 - -
Lal23g0869 1015 Gene3D - 764 926 - -
Lal23g0869 1015 PANTHER URIDINE KINASE 667 1006 - -
Lal23g0869 1015 PANTHER URIDINE KINASE 368 477 - -
Lal23g0869 1015 PANTHER URIDINE KINASE 553 667 - -
Lal23g0869 1015 PANTHER URIDINE KINASE 2 314 - -
Lal23g0869 1015 Gene3D - 579 756 IPR027417 -
Lal23g0869 1015 PRINTS Uridine kinase signature 580 597 - -
Lal23g0869 1015 PRINTS Uridine kinase signature 607 618 - -
Lal23g0869 1015 PRINTS Uridine kinase signature 701 711 - -
Lal23g0869 1015 Gene3D - 62 241 IPR027417 -
Lal23g0869 1015 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 568 750 IPR027417 -
Lal23g0869 1015 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 62 227 IPR027417 -
Lal23g0869 1015 CDD UMPK_like 63 225 - -
Lal23g0869 1015 Pfam Phosphoribulokinase / Uridine kinase family 582 747 IPR006083 GO:0005524|GO:0016301
Lal23g0869 1015 SUPERFAMILY CYTH-like phosphatases 775 922 IPR033469 -
Lal23g0869 1015 SMART AAA_5 579 723 IPR003593 -
Lal23g0869 1015 SMART AAA_5 60 210 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g0869 Lal-Chr23 11003167 11019120 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g0869 575 738 PRT Gene Family AT1G55810 25.281 2.39e-09 58.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g0869 23 11003167 11019120 Lal23g0869 23 11003167 11019120 ECH
Lal15g0730 15 5117291 5135073 Lal23g0869 23 11003167 11019120 LSH
Lal23g0869 23 11003167 11019120 Lal7g1328 7 18523828 18531756 PCT