Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lal23g0848 | ATGAGTCATAACAACGAGAACCAGAAATCTCTGATCTACTCATTCGTGTCTCGTGGAACCGTTATTCTCTCAGAATACACAGAATTCAGTGGGAACTTCAATTCCATCGCTTTTCAATGCCTTCAGAAACTTCCAGCTACTAACAACAAGTTCACTTATAACTGTGACGCTCACACCTTCAATTACCTCGTCGACAATGGCTTCAAGGCTAATCATGACAATTTTGAAAAATGTCTCTCACTTTGGGATGTTGCAGCATATTGTGTTGTTGCAGATGAATCGGTTGGAAGACAGGTGCCTATGGCTTTTCTAGAGCGTGTTAAGGATGATTTTGTTGCGAAATATGGCGGTGGAAAGGCAGCTACTGCTCCACCCAACAGTCTTAATAAGGAGTTTGGGCCAAAATTGAAGGAGCATATGCAGTACTGTGTTGATCATCCTGAAGAGATAAGCAAGCTTGCAAAGGTCAAAGCTCAGGTTTCCGAAGTCAAAGGTGTCATGATGGAGAATATTGAAAAGGAAGGACTTTGGTGGCAGATGGGAAAAGTTCTGGACAGGGGAGAAAAGATAGAGCTTCTGGTTGACAAGACTGAGACCCTTCATCATCAGGCACAAGACTTCAGAAATTCAGGGACCCAAATCCGTAGAAAAATGTGGCTGAAAAACATGAAGACAAAGCTGATTGTATTGGCGATTGTGATTCTCCTGATCCTCATAATAGTCCTTTCTGTCTGCCATGGGTTCCAATGTGGAAAATAA | 759 | 0.4242 | MSHNNENQKSLIYSFVSRGTVILSEYTEFSGNFNSIAFQCLQKLPATNNKFTYNCDAHTFNYLVDNGFKANHDNFEKCLSLWDVAAYCVVADESVGRQVPMAFLERVKDDFVAKYGGGKAATAPPNSLNKEFGPKLKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKEGLWWQMGKVLDRGEKIELLVDKTETLHHQAQDFRNSGTQIRRKMWLKNMKTKLIVLAIVILLILIIVLSVCHGFQCGK | 252 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lal23g0848 | 252 | ProSiteProfiles | v-SNARE coiled-coil homology domain profile. | 152 | 221 | IPR042855 | - | |
| Lal23g0848 | 252 | SUPERFAMILY | SNARE-like | 11 | 143 | IPR011012 | - | |
| Lal23g0848 | 252 | Pfam | Regulated-SNARE-like domain | 39 | 133 | IPR010908 | - | |
| Lal23g0848 | 252 | PANTHER | SNARE PROTEINS | 8 | 200 | - | - | |
| Lal23g0848 | 252 | Pfam | Synaptobrevin | 151 | 246 | IPR042855 | - | |
| Lal23g0848 | 252 | PANTHER | SYNAPTOBREVIN, LONGIN-LIKE DOMAIN PROTEIN-RELATED | 8 | 200 | - | - | |
| Lal23g0848 | 252 | Gene3D | - | 150 | 245 | - | - | |
| Lal23g0848 | 252 | Gene3D | Longin domain | 1 | 149 | - | - | |
| Lal23g0848 | 252 | ProSiteProfiles | Longin domain profile. | 15 | 136 | IPR010908 | - | |
| Lal23g0848 | 252 | CDD | R-SNARE | 152 | 219 | - | - | |
| Lal23g0848 | 252 | CDD | Longin | 12 | 143 | IPR010908 | - | |
| Lal23g0848 | 252 | SUPERFAMILY | SNARE fusion complex | 147 | 223 | - | - | |
| Lal23g0848 | 252 | SMART | Longin_2 | 36 | 135 | IPR010908 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lal23g0848 | Lal-Chr23 | 10877019 | 10880865 | Wgd |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Lal16g0784 | 16 | 5074481 | 5078139 | Lal23g0848 | 23 | 10877019 | 10880865 | LSH |