Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g0825 ATGGAGGAGAAGAAATTTGTGTGCAAGTTTTGCAGTAAGAGGTTTCCTTGTGGAAAGAGTCTAGGTGGTCACATAAGGACTCATATGAGTGAACAAAGGAATAATAATAATAATACTATTAGTAATAATAATAATAATAATGATGCTGAATGTGATAATCTCAACTTGGATGCTGTGAGAATGAAGCAGAAGAGAGATTTATGGTGTGAAGCTGGTTATGGCCTTAGAGAGAATCCAAAGAAAACAATGAGGTTTGTGCATTCCAAAGTCATTTTGGAACAACAACAACAAGAGGAGAAGTTTTGCAAAGAATGTGGAAAAGGTTTTCCATCATTGAAAGCACTTTGTGGTCACATGGCTTGTCATTCTGAGAAGCAGAAATTGGTTATGGATATTCAATCTGATACTGAAGAGAGTTGTGATATTCCAAAGCATCCAAGGAGATCTAAGAGAATGAGTTTCAAGACCCTTATTGATCAAACATATAATGGTTGTTCTTCTGTGTCTGAGGTGGATCAGGAGCAAGAAGAGGTTGCAAGGTGTTTGATGTTGTTGTCCAATGATTCTAGTCATAAGGGTCCTTTTGCTTTGATTACTGAGTCTTCTGAAAACAACTCAGTTGTGGTAGAAGAGGAAACAAAATCATCATCTGTTGATTTGAGGAATAGTATTAAAAATAGGAACAAGTTTGTTTCTAATGGTTATGATCTTGTGGAGAAAAAGGAGCTCAAGTTAAAGTCTGCTGATAACTCATATTCTGGATATTACAGATATGATCCTCAAACCAAAATGGCAAAATCAGATGTTTCAAAAGAAGAATTTAAGTCTGAATTCGACGATTACGATGTTGAATCAAGGAAGAAGCTGAAAATGAATACAGAGAGAAGCAAATACACTCTAACTTTATTTAAGAAATCAGTGAAGAAGGATTTGGATTATGATGCAACAGGTGGAACTACAAGCAAGTTTGATTCTTTCAATCATAGCAAGAAGATGGAAAATGGTTTTGCCAATGATGAAATATATGAGACTGGTGAAAAGGACTTGAAGTTTGAGAGCTTAGCTTATGATTCAACTTATGAGAGTGATGGGAATAGCTCAGACACTGATTCATTTCCTGCTCCAAAAAAGTCTCATAGCAGTAAAATTCTGAATGGAAAGAAGTCTAGCAAGACTAAGAAGAAGAAGAAGTTGAAGTCAAAGAAAAGCAAGGAACATGAGTGTCCAATCTGCTACAAGATTTTCAAGTCAGGCCAAGCCTTAGGAGGTCATAAAAGATCCCATTTTGTTGGAGGTTCTGAAGAAAACACTGTAATCATCAACCAAGGTCCTTGCCTTATTGATCTCAATCTACCAGCTCCTGTTGATGAATAG 1374 0.3617 MEEKKFVCKFCSKRFPCGKSLGGHIRTHMSEQRNNNNNTISNNNNNNDAECDNLNLDAVRMKQKRDLWCEAGYGLRENPKKTMRFVHSKVILEQQQQEEKFCKECGKGFPSLKALCGHMACHSEKQKLVMDIQSDTEESCDIPKHPRRSKRMSFKTLIDQTYNGCSSVSEVDQEQEEVARCLMLLSNDSSHKGPFALITESSENNSVVVEEETKSSSVDLRNSIKNRNKFVSNGYDLVEKKELKLKSADNSYSGYYRYDPQTKMAKSDVSKEEFKSEFDDYDVESRKKLKMNTERSKYTLTLFKKSVKKDLDYDATGGTTSKFDSFNHSKKMENGFANDEIYETGEKDLKFESLAYDSTYESDGNSSDTDSFPAPKKSHSSKILNGKKSSKTKKKKKLKSKKSKEHECPICYKIFKSGQALGGHKRSHFVGGSEENTVIINQGPCLIDLNLPAPVDE 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g0825 457 ProSiteProfiles Zinc finger C2H2 type domain profile. 6 33 IPR013087 -
Lal23g0825 457 ProSitePatterns Zinc finger C2H2 type domain signature. 102 122 IPR013087 -
Lal23g0825 457 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 457 - -
Lal23g0825 457 MobiDBLite consensus disorder prediction 381 402 - -
Lal23g0825 457 MobiDBLite consensus disorder prediction 362 378 - -
Lal23g0825 457 ProSiteProfiles Zinc finger C2H2 type domain profile. 406 428 IPR013087 -
Lal23g0825 457 ProSitePatterns Zinc finger C2H2 type domain signature. 408 428 IPR013087 -
Lal23g0825 457 SUPERFAMILY beta-beta-alpha zinc fingers 101 428 IPR036236 -
Lal23g0825 457 Pfam C2H2-type zinc finger 102 124 - -
Lal23g0825 457 Pfam C2H2-type zinc finger 6 31 - -
Lal23g0825 457 Pfam C2H2-type zinc finger 406 428 - -
Lal23g0825 457 ProSiteProfiles Zinc finger C2H2 type domain profile. 100 127 IPR013087 -
Lal23g0825 457 SMART c2h2final6 100 122 IPR013087 -
Lal23g0825 457 SMART c2h2final6 406 428 IPR013087 -
Lal23g0825 457 SMART c2h2final6 6 28 IPR013087 -
Lal23g0825 457 MobiDBLite consensus disorder prediction 362 402 - -
Lal23g0825 457 ProSitePatterns Zinc finger C2H2 type domain signature. 8 28 IPR013087 -
Lal23g0825 457 Gene3D Classic Zinc Finger 1 64 - -
Lal23g0825 457 SUPERFAMILY beta-beta-alpha zinc fingers 2 32 IPR036236 -
Lal23g0825 457 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 457 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g0825 Lal-Chr23 10720177 10721550 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lal23g0825 zf-C2H2_6 5.3e-06 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g0825 23 10720177 10721550 Lal23g0825 23 10720177 10721550 ECH