Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g0818 ATGTTAGTGTCTGTCCGAGTAACGAGGTTACTTTCTCGCTGTACCCCAAAACAATGGAAAATATCCCACAACTACAGCCACGCGCCACCACCACTACCACCGTCATCGCCGCCTTCACCACCACCACCACTACCACCGTCATCGCCGCCTTCACCACCACCACCACTTCCTCTAACCTTCTACCTTTCTCACATTTGCAGAAACATAAACACTCTGAAAAAACTCCACGCCTTCCTCATCCTCCATGGCCACACCAATAACCTTCTCTCCCACACAAAACTCCTCAGTCTCTACGGTTCCTTCGGCTTTGTCTCTCACGCGCGTCGCTTATTCGATCAATTACCAAACCCTGACTTATACTCCTTCAAAGTCATGCTTAGGTGGTACTTCCTAAACGACATGTACTCTCACGTCGTTCCATTTTACAATCTCATTAGGGTTTCCCTTGGTATCTGCAATGACGACGTCGTTTTCTCTATTGTTCTCAAAGCATGTTGTGAGTTACGTGGCCTCATTCAAGGGACTAAGCTACATTGCCATATTCTCAAAGCCAAGGTCCCTGATAGCTTTGTTTTGACAAGCCTTGTTGATGTTTATTCTAAATGTGGGTGTGTTGTTGGTGCGCGTAACGTGTTTGATGAAATTACTGACAGAGATGTTGTGTCTTGGACTTCGATGATTGTGGCTTATGTTCAGAATGAGTGTGCTCATGAAGGGTTGAGTTTGTTTAATAAGATGAGAGAAGGGTTTGTTGATGGGAATGAGTTTACTTTAGGGAGTTTAGTGAAGGCCTGCACCAACTTGAAGTCTTTGCATCAGGGAAAGTGGGTTCATGGCTATGTTATTAAGAGTGGGATTGAGTTTAATTCTTTTTTATTGACATCTCTTTTGGATATGTATGTTAAGTGTGGGGATATTAAGGATGCACGATCCGTATTTGATGAGTTTTCCACATGTGACCTTGTTTCATGGACCGCGATGATTGTAGGGTATACTCAGAGAGGTTACCCGCACATGGCGTTGGAACTGTTTACTAATGAGAAATGGGAAGGGGTTTTGCCCAATTCTGTTACCCTTGGGAGTTTGCTTTCGGCATGTGCTCAGCTAGGTAATGCCATCATGGGAAAGTCACTTCATGCTGTTGTAATTAAGTGTGGATTGGATGATCATTCAGTCAGGAATGCTCTTGTTGATATGTATGCAAAGTGTTGTATCACTCTGGATGCTCGTTATGTATTTGAAACGACTGTCGAGAAGGATGTCGTCTCTTGGAACACAATGATTTCTGGTTATGCGCATAGTGGCTCTGCGTATGAAGCTCTTGAGCTATTTCATAGGATGAGATTGGACTCGTTTTCACCTGATGCGGTCACATTGGTTGGTGTTCTATCAGCTTGTGCTACCCTTGGTGCTCTTCATGTTGGTTCTTCAATCCACGCTTTCGCTTTGAAGGATGGCCTTGTATCGTCCAGCATCTATGTTGGCACTGCACTCCTGAACTTGTATGCAAAGTGTGGGGACGCAAAATCAGCTCGTATGGTGTTTGATGGGATGGGAGAAAAGAATACAGTGACGTGGAGCGCGATGATAGGTGGCTATGGGATGCAAGGTGATGGCAATGGATCACTTGCACTCTTTAGGGATATGTTGGAAGAGGAATTTGAGCCTAATGAAGTGATCTTTACAACTATATTAGCAGCATGCAGCCATTCAGGGATGGTTGGAGAAGGGTCAAGGTTATTTAATTTGATGTGTGGGGAATTAAATTTTGTTCCTTCAATGAAGCATTATGCATGTATGGTTGATCTATTATCACGTGCTGGAAACCTTGAAGAAGCATTGGACTTCATTGACAAAATGCCTGTTCAACCTAGTATCAGTGTGTTTGGAGCTTTTCTTCATGGGTGTGGACTTCATTCGAGGTTTGAGTTAGGAGAAGCGGCAATGAAGAGAATGTTGGAGTTGCACCCTGATGAAGCTTGTTACTATGTGCTCATGTCAAACCTATATGCTTCAGATGGGAGATGGGGCCAGGTTAAGCATGTGAGAGAGATGATAAAGCAAAAAGGATTGAACAAGGTCCCTGGTTGTAGTTCACTGGAGATGGATATCAACAATGATATACATGCCAAAGTGGCAGCTATTTCTTGA 2151 0.4384 MLVSVRVTRLLSRCTPKQWKISHNYSHAPPPLPPSSPPSPPPPLPPSSPPSPPPPLPLTFYLSHICRNINTLKKLHAFLILHGHTNNLLSHTKLLSLYGSFGFVSHARRLFDQLPNPDLYSFKVMLRWYFLNDMYSHVVPFYNLIRVSLGICNDDVVFSIVLKACCELRGLIQGTKLHCHILKAKVPDSFVLTSLVDVYSKCGCVVGARNVFDEITDRDVVSWTSMIVAYVQNECAHEGLSLFNKMREGFVDGNEFTLGSLVKACTNLKSLHQGKWVHGYVIKSGIEFNSFLLTSLLDMYVKCGDIKDARSVFDEFSTCDLVSWTAMIVGYTQRGYPHMALELFTNEKWEGVLPNSVTLGSLLSACAQLGNAIMGKSLHAVVIKCGLDDHSVRNALVDMYAKCCITLDARYVFETTVEKDVVSWNTMISGYAHSGSAYEALELFHRMRLDSFSPDAVTLVGVLSACATLGALHVGSSIHAFALKDGLVSSSIYVGTALLNLYAKCGDAKSARMVFDGMGEKNTVTWSAMIGGYGMQGDGNGSLALFRDMLEEEFEPNEVIFTTILAACSHSGMVGEGSRLFNLMCGELNFVPSMKHYACMVDLLSRAGNLEEALDFIDKMPVQPSISVFGAFLHGCGLHSRFELGEAAMKRMLELHPDEACYYVLMSNLYASDGRWGQVKHVREMIKQKGLNKVPGCSSLEMDINNDIHAKVAAIS 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g0818 716 Gene3D Tetratricopeptide repeat domain 496 707 IPR011990 GO:0005515
Lal23g0818 716 Pfam E motif 639 701 IPR046848 -
Lal23g0818 716 Gene3D Tetratricopeptide repeat domain 387 477 IPR011990 GO:0005515
Lal23g0818 716 Gene3D Tetratricopeptide repeat domain 175 272 IPR011990 GO:0005515
Lal23g0818 716 Gene3D Tetratricopeptide repeat domain 58 174 IPR011990 GO:0005515
Lal23g0818 716 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 420 454 IPR002885 -
Lal23g0818 716 Pfam PPR repeat family 419 467 IPR002885 -
Lal23g0818 716 Pfam PPR repeat family 521 568 IPR002885 -
Lal23g0818 716 Pfam PPR repeat 597 620 IPR002885 -
Lal23g0818 716 Pfam PPR repeat 294 316 IPR002885 -
Lal23g0818 716 Pfam PPR repeat 221 248 IPR002885 -
Lal23g0818 716 Pfam PPR repeat 192 219 IPR002885 -
Lal23g0818 716 Pfam PPR repeat 322 344 IPR002885 -
Lal23g0818 716 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 219 249 IPR002885 -
Lal23g0818 716 PANTHER OS07G0578800 PROTEIN-RELATED 71 711 IPR045215 GO:0003723|GO:0009451
Lal23g0818 716 MobiDBLite consensus disorder prediction 27 51 - -
Lal23g0818 716 TIGRFAM PPR: pentatricopeptide repeat domain 422 456 IPR002885 -
Lal23g0818 716 TIGRFAM PPR: pentatricopeptide repeat domain 559 593 IPR002885 -
Lal23g0818 716 TIGRFAM PPR: pentatricopeptide repeat domain 524 558 IPR002885 -
Lal23g0818 716 TIGRFAM PPR: pentatricopeptide repeat domain 221 248 IPR002885 -
Lal23g0818 716 TIGRFAM PPR: pentatricopeptide repeat domain 597 620 IPR002885 -
Lal23g0818 716 TIGRFAM PPR: pentatricopeptide repeat domain 294 321 IPR002885 -
Lal23g0818 716 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 522 556 IPR002885 -
Lal23g0818 716 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN MITOCHONDRIAL 71 711 - -
Lal23g0818 716 MobiDBLite consensus disorder prediction 22 51 - -
Lal23g0818 716 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 320 354 IPR002885 -
Lal23g0818 716 Gene3D Tetratricopeptide repeat domain 273 386 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g0818 Lal-Chr23 10653152 10655302 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g0818 23 10653152 10655302 Lal23g0818 23 10653152 10655302 ECH