Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g0678 ATGCCTATTGTCACACAAACAACAACAAAAACAAAAGTAGTGACAGAAAACATGAAATGGAGAAAACCCAGAAACCAAATCAACATTACAGAAACAGATCCAAATCTACAAACCCCTTCACTAACCCAATCCACACCTTGCAAATCCACCATTTCCTCTTTCTTACTCTCAACTTTCTCCAATAACAACAACAACAATGAAAACATCAGAAACCGCCACCATAGCAAGAAAAAAACAAACTTTTCTGCTTCATCAACCTTCAGGGGCTTGGGCTGCACCGCCGGAGCACCGCAAGAGGTGTCGGTGCCGGCTATGATTCGAAGCTCAGCTGATTGGGATGTGAATAAGAAAAAATTAAGAAAAAAGAAGTACAAGAGTACCAAGAACACTAATGTTGTTATCTCAGAAGGTTCTAATTCTAATAATAATCTTGGTTATGTGGATTTTCAAGATGTTTGGTGTGGCCCTGGAATTGGGTTTTCAACTGATGCAGCATCTATTGATCATGTTGTAACAAGGAAGAATGTGTCTTCAAGAGGGAAAATTGATGTTGAGAAATTAAATCATGGGGAGTGTTCATCTTATTTGGGAAGGCGTCCTGTCACTCCAGAAACCATCTCGTTTCTGGACACTGATCCTGACATTTTCGCAGCCTCGGATTCCTTTGGACCTGCGGCTCCATACTATTGCCACATTCAAGATCCTTCATCTGATGATTCATCTGATGGTTTTGCTGAGGGTTCAGGTCACAAGGCAAGCAGCCTTATCGTTCCTCCGAGGCTCACTCTCGAAATCGAGCTAATATTGCATTTCTTGATTGTTGTTGCTGTCATTTTGAAGATTTTGCTTCAAGGTGGTCTACTAATGGGGGGACGATTAACTAAGCATGACCGATTCAGAGGCTTGAGACTTAATATTGATAACATGTCATATGAGCAATTGCTTGATCTCGGTGAAAGAATTGGTTATGTGAATGCTGGACTTAAAGAAGATGAGATGGGACGCAACATAAGGAAGACTAAGTTTAAATTTTCACATGATGCATCAAAGAATCAAGTAGATAAAAAGTGCACCATTTGTCAGGAAGAGTATGAAGCAGATGATGAGCTGGGGAAGCTGAATTGTAAACACAGCTATCACTTTCGGTGTATAAAACAATGGGTCGCGCAGAAAAATTTCTGTCCAGTGTGCAAGCAACAAGTTGTGGCTCGACGCTGA 1218 0.4097 MPIVTQTTTKTKVVTENMKWRKPRNQINITETDPNLQTPSLTQSTPCKSTISSFLLSTFSNNNNNNENIRNRHHSKKKTNFSASSTFRGLGCTAGAPQEVSVPAMIRSSADWDVNKKKLRKKKYKSTKNTNVVISEGSNSNNNLGYVDFQDVWCGPGIGFSTDAASIDHVVTRKNVSSRGKIDVEKLNHGECSSYLGRRPVTPETISFLDTDPDIFAASDSFGPAAPYYCHIQDPSSDDSSDGFAEGSGHKASSLIVPPRLTLEIELILHFLIVVAVILKILLQGGLLMGGRLTKHDRFRGLRLNIDNMSYEQLLDLGERIGYVNAGLKEDEMGRNIRKTKFKFSHDASKNQVDKKCTICQEEYEADDELGKLNCKHSYHFRCIKQWVAQKNFCPVCKQQVVARR 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g0678 405 ProSiteProfiles Zinc finger RING-type profile. 357 398 IPR001841 -
Lal23g0678 405 Pfam Ring finger domain 356 398 IPR001841 -
Lal23g0678 405 PANTHER C3HC4-TYPE RING ZINC FINGER PROTEIN 10 242 - -
Lal23g0678 405 PANTHER C3HC4-TYPE RING ZINC FINGER PROTEIN 281 404 - -
Lal23g0678 405 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 10 242 IPR045191 GO:0061630
Lal23g0678 405 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 281 404 IPR045191 GO:0061630
Lal23g0678 405 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 325 403 IPR013083 -
Lal23g0678 405 SUPERFAMILY RING/U-box 350 402 - -
Lal23g0678 405 SMART ring_2 357 397 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g0678 Lal-Chr23 9434197 9438836 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g0678 1 312 C3H Transcription Factor Family AT1G73760 33.531 1.26e-36 133
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g0678 23 9434197 9438836 Lal8g0447 8 2978437 2983738 ECH
Lal23g0678 23 9434197 9438836 Lal23g0678 23 9434197 9438836 ECH
Lal15g0936 15 7196694 7200856 Lal23g0678 23 9434197 9438836 LSH