Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g0645 ATGGATAAGTTCTTAATCAATTGTTGTTTTGCATTCTTTCTTCTTTATTCTCTCTTGCTTGTGCATGGCATAGAATTATCATGCAATCAAACTCCATATCCTCATCTGTGCAAACATTACATTGACACTAGTCACACAACCAATAAAATATCAACTACCCTAGATGCTTCATCTTCTTTTAATTCCTTCCATGATATGGCACTTAAGGTCACCATGGACCAAGCCATAAACTATCATAAACTTTTCTCAACCATGGAATTGAATAATTTCAAAGACACTCGTGCCAAGTTAGCATGGGAAGATTGTGTAGAGCTTTATGAGGACACAATTAATCAACTCAACCGTTCAATGATCTCAAACAATATAAACGACAAGTTAACTTGGCAAAGTGCATCTATTGCTAATCATCAAACTTGCCAAAATGGTTTCATTGATTTCAACCTTTCTTCTCACCTAAACTACTTCCCACCCATGTTAACAAACTTCTCCAAATTGCTTAGCAATTCCTTGTTCATTAGTAACACCATCGCTCTGGCATCATCATCATCACCATTATCATCATCAGAATCATCGACGAAACAAGTTGGTGGGAGAAAGTTGCTTTCATCACATGATGGATTCCCTAATTGGGTTTCATCTTCAGATAGAAGGCTACTTCAAGCTACAAGGGTAGCACCACTTAAAGCTGATATTGTTGTGGCACAAGATGGAAGTGGTAACTATAAGACCATATCTGAAGGTGTAGCTGCAGCTTCAAAGTTGAGTGGGAAAGGAAGAATTGTTGTGCATGTAAAAGCTGGTATTTACAAAGAGAATGTTGATATAAAAAAGACAGTGAAGAAGTTAATGATAATTGGAGATGGGATTGATGCTACTATTGTTACTGCTAACCGTAATGCACAAGATGGCTTTACCACTTTTCGCACAGCTACTTTTGCGGTTTCAGGTGAAGGCTTCATCGCCAAGGACATAACCTTCGAGAACACAGCCGGACCACAAAAGCACCAAGCGGTGGCGCTCCGTTCCAGCGCCGACCACTCAGTATTCTACCGCTGCAGCTTCAAGGGCTACCAAGACACCTTATACGTACACGCTGAGCGCCAATTCTACCGCGATTGTCACATATACGGAACCGTAGACTTCATCTTCGGCGACGCCATAACAGTTCTTCAAAACTGCAACATTTATGTGAGAAAACCAATGAGTAACCAACAGAATACGGTCACCGCACAAGGGAGAACTGATCCTAATGAGAACTCCGGCATCATTATTCATAATTCTCTTATAACTGCTTCTGGTGAGTTGAAATCTGTTCAAAGTAATTTCAAAACGTTTCTTGGTAGACCGTGGCAAAAGTATTCGAGGACTGTGATTTTGAAGAGTAATATTGATGGTTTGGTTAACCCTTTGGGTTGGGTTCCTTGGAGTGGAAGCTTTGCTTTGAATACTTTGTATTATGGTGAATACATGAATAATGGACCTGGTGCTAATACTAAAGGTAGGGTTAACTGGGTAGGTTTTCATGTGATAAATGATCCTACTGAGGCTGTGAAATTCTCTGTTGGTGATTTCTTGAATGGAGACTCGTGGATTCCTGGTACTGGTGTTCCATTTGATGTGGGGTTGTGA 1629 0.4021 MDKFLINCCFAFFLLYSLLLVHGIELSCNQTPYPHLCKHYIDTSHTTNKISTTLDASSSFNSFHDMALKVTMDQAINYHKLFSTMELNNFKDTRAKLAWEDCVELYEDTINQLNRSMISNNINDKLTWQSASIANHQTCQNGFIDFNLSSHLNYFPPMLTNFSKLLSNSLFISNTIALASSSSPLSSSESSTKQVGGRKLLSSHDGFPNWVSSSDRRLLQATRVAPLKADIVVAQDGSGNYKTISEGVAAASKLSGKGRIVVHVKAGIYKENVDIKKTVKKLMIIGDGIDATIVTANRNAQDGFTTFRTATFAVSGEGFIAKDITFENTAGPQKHQAVALRSSADHSVFYRCSFKGYQDTLYVHAERQFYRDCHIYGTVDFIFGDAITVLQNCNIYVRKPMSNQQNTVTAQGRTDPNENSGIIIHNSLITASGELKSVQSNFKTFLGRPWQKYSRTVILKSNIDGLVNPLGWVPWSGSFALNTLYYGEYMNNGPGANTKGRVNWVGFHVINDPTEAVKFSVGDFLNGDSWIPGTGVPFDVGL 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g0645 542 PANTHER PECTINESTERASE 19 541 - -
Lal23g0645 542 Pfam Pectinesterase 230 528 IPR000070 GO:0030599|GO:0042545
Lal23g0645 542 Pfam Plant invertase/pectin methylesterase inhibitor 24 170 IPR006501 GO:0004857
Lal23g0645 542 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 24 176 IPR035513 -
Lal23g0645 542 ProSitePatterns Pectinesterase signature 2. 375 384 IPR033131 -
Lal23g0645 542 TIGRFAM PME_inhib: pectinesterase inhibitor domain 24 176 IPR006501 GO:0004857
Lal23g0645 542 Gene3D - 224 542 IPR012334 -
Lal23g0645 542 SUPERFAMILY Pectin lyase-like 226 541 IPR011050 -
Lal23g0645 542 Gene3D Invertase/pectin methylesterase inhibitor family protein 22 177 IPR035513 -
Lal23g0645 542 PANTHER PECTINESTERASE INHIBITOR 5-RELATED 19 541 - -
Lal23g0645 542 ProSitePatterns Pectinesterase signature 1. 256 275 IPR018040 -
Lal23g0645 542 CDD PMEI-like_3 26 177 - -
Lal23g0645 542 SMART PMEI_2 19 172 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g0645 Lal-Chr23 9170203 9174275 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g0645 27 542 Carbohydrate Esterase AT1G23200 54.034 0.0 555
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g0645 23 9170203 9174275 Lal23g0645 23 9170203 9174275 ECH