Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g1315 ATGGCTTCAACTTCTCTTACTCCAAATGCTTTATCTCCAATTGGTGTTTCATTACCACTTCCTATAACAAATTCTTCAACTTCACCATCTTCTAATTCTCCTTTTGCTCCTCCACCATCATCTATACCGCCGCCGCCGACTTCACCACCAGTTTCTCAACCACCATTACCACCAGCTGCAGCATCAGCCCCACCACAAGCAGCTATAACTGCCCCTCCTCCAGCTCATACTTCACCATCCCTCCCAAATTTGTCCCCTCCTCCATTAGTAATAGCTAGTTCCCCTCCTCCTCCTCCAGCCAATGTACCAAAGCCTCCATCCACCAATTCTCCTCCCCGGAAGGAAAAGCCGCCGAAAACTAATCCTTCGCCACATTCGCGAGCACCCCCTCCATCTGCTTCCCATCCTCCCCCTGATGCTCCTCCTCCATCCACATTGCCATCGACGCCTTCGACCGATGCCCCCTCTCCATCCGCATTGCCATCAACACCTTCGGCCGATGTTCCCCCTCCATCCACATTGCCATCAATGCCTTCGAACAATGTCCCTCCTCCATCCACATTGCCATCAACGCCTTCGAACGATGTTCCTCCTCCATCCACATTGCCATCAACGCCTTCAAACGATGCCCCCCCTCCATCCACATTGCCATCAACGCCTTCGAACGATGTTCCTCCTCCATCAGCATTGCCATCAACGCCTTCGAACGATGTTCCTCCTCCATCAGCATTGCCATCAACGCCTTCGAAAGATGTCCTTCCTCCATCAACATTGCCATCAACGCCTTCGAACAATGTCCCCCCTCCATCCACATTGCCATCAACAACCCCTCCTTTGGTCTCATCACCTCCAGTTTCTTTGCCTGGCCCCGCGACTAATAAGACAGCAGCCGAGGGTCCAACTGTATCTCTACCCTCTATTCCGACTGAGAAACCCAATGCTAAACCAACTAATGGGAATGTCACTGATGGTGTATCCACAAAAACCACATCTTCGCATTCGGGAGGGTTGAATACGGGAGCCTCTGCAGTTGTTGGTATTACAGTTGGTTTTCTAGTTCTCAGTCTTCTTTTTATGACTGTGCGGTTTGTGAAGAAAAAGAAGAAGAAAGAAAGAGGGTCGAAAGATGGTTTCCCTACGGTTTCTCCATTTACCTCATCTCACAATTCAGGTACCTCATTCTTGAGAACACGCTCTCCAGCTAAATTTGTAGGTAGTGCCTCTGGTAGTGGTTCTGTGTATCCCCCGCCAGATCCCAACACAGTAGGTAGTTCAAGATCATGCTTCACATATGAAGAACTTACTCAAGCTACAAATGGATTTTCAGCACAAAATATGTTGGGAGAAGGTGGATTTGGTTGCGTGTATAAAGGTTTGCTTGTAGATGGAAGAGAAGTGGCTGTGAAACAACTCAAAATTGGTGGTGGGCAAGGAGAACGGGAATTCAGAGCGGAAGTTGAGATTATTAGCCGTGTACACCATCGTCACCTAGTTTCCTTGGTCGGTTACTGTATATCCAAGCATCAAAGGTTGCTCGTCTACGATTATCTTCCCAATGATACTCTTCACTACCATCTTCATGGTGAAAATAGACCTGTTCTGGATTGGCCTACCAGAGTCAAGGTTGCCGCTGGTGCAGCTCGTGGAATAGCTTACCTACATGAAGACTGCCATCCACGCATTATTCATCGAGACATTAAGTCATCAAACATCCTTCTTGATCAAAACTTTGAAGCTCGAGTTTCAGACTTTGGACTAGCAAAATTAGCATTGGATACATATACACATATAACAACTCGCGTAATGGGAACCTTTGGGTACATGGCACCAGAATATGCAACAAGTGGGAAATTAACCGAAAAGTCTGATGTATATTCTTTTGGGGTTGTGCTTTTAGAGCTAATTACGGGTCGGAAACCTGTAGACACCTCTCAGCCAATTGGTGATGAGAGCCTGGTTGAATGGGCTCGGCCTCTGTTGACGGAAGCACTTGAAAGTGAGGACTTCGAGATTTTGGTAGATTCGAGACTGGGAAAGGACTACAATAGAAACGGAATGTTTCAGATGATTGAGGCTGCTGCAGCTTGCGTGCGTCACTCTGCAGTAAAGAGGCCGAAGATGAGCCAAGTAGTGAGAGCTTTAGATTCCTTAAATGAATTTCCTGATCTCAATAACGGACTCAAACCCGGGCAGAGTTCGGTCTTTGATTCGGCGCAGCAATCGGCACACGCCAGAATGTTTAGGAGGATGGCTTTTGGTAGCCAAGGAAGTTCCAGTATCTTTAATGAGTCTCAAAGCAGCTGGAGGAGTAGAGAGCAAGAGGACTCAAATAATATGTTCCCCCAAAAACAAATCTAG 2358 0.4737 MASTSLTPNALSPIGVSLPLPITNSSTSPSSNSPFAPPPSSIPPPPTSPPVSQPPLPPAAASAPPQAAITAPPPAHTSPSLPNLSPPPLVIASSPPPPPANVPKPPSTNSPPRKEKPPKTNPSPHSRAPPPSASHPPPDAPPPSTLPSTPSTDAPSPSALPSTPSADVPPPSTLPSMPSNNVPPPSTLPSTPSNDVPPPSTLPSTPSNDAPPPSTLPSTPSNDVPPPSALPSTPSNDVPPPSALPSTPSKDVLPPSTLPSTPSNNVPPPSTLPSTTPPLVSSPPVSLPGPATNKTAAEGPTVSLPSIPTEKPNAKPTNGNVTDGVSTKTTSSHSGGLNTGASAVVGITVGFLVLSLLFMTVRFVKKKKKKERGSKDGFPTVSPFTSSHNSGTSFLRTRSPAKFVGSASGSGSVYPPPDPNTVGSSRSCFTYEELTQATNGFSAQNMLGEGGFGCVYKGLLVDGREVAVKQLKIGGGQGEREFRAEVEIISRVHHRHLVSLVGYCISKHQRLLVYDYLPNDTLHYHLHGENRPVLDWPTRVKVAAGAARGIAYLHEDCHPRIIHRDIKSSNILLDQNFEARVSDFGLAKLALDTYTHITTRVMGTFGYMAPEYATSGKLTEKSDVYSFGVVLLELITGRKPVDTSQPIGDESLVEWARPLLTEALESEDFEILVDSRLGKDYNRNGMFQMIEAAAACVRHSAVKRPKMSQVVRALDSLNEFPDLNNGLKPGQSSVFDSAQQSAHARMFRRMAFGSQGSSSIFNESQSSWRSREQEDSNNMFPQKQI 785
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g1315 785 MobiDBLite consensus disorder prediction 369 395 - -
Lal22g1315 785 Pfam Protein tyrosine and serine/threonine kinase 443 714 IPR001245 GO:0004672|GO:0006468
Lal22g1315 785 MobiDBLite consensus disorder prediction 296 339 - -
Lal22g1315 785 MobiDBLite consensus disorder prediction 162 248 - -
Lal22g1315 785 CDD STKc_IRAK 447 717 - -
Lal22g1315 785 SUPERFAMILY Protein kinase-like (PK-like) 415 714 IPR011009 -
Lal22g1315 785 MobiDBLite consensus disorder prediction 1 339 - -
Lal22g1315 785 MobiDBLite consensus disorder prediction 32 150 - -
Lal22g1315 785 ProSitePatterns Protein kinases ATP-binding region signature. 447 469 IPR017441 GO:0005524
Lal22g1315 785 MobiDBLite consensus disorder prediction 379 395 - -
Lal22g1315 785 MobiDBLite consensus disorder prediction 757 785 - -
Lal22g1315 785 ProSiteProfiles Protein kinase domain profile. 441 721 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal22g1315 785 MobiDBLite consensus disorder prediction 260 285 - -
Lal22g1315 785 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 168 765 - -
Lal22g1315 785 ProSitePatterns Serine/Threonine protein kinases active-site signature. 561 573 IPR008271 GO:0004672|GO:0006468
Lal22g1315 785 Gene3D Transferase(Phosphotransferase) domain 1 517 726 - -
Lal22g1315 785 MobiDBLite consensus disorder prediction 1 31 - -
Lal22g1315 785 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK8 168 765 - -
Lal22g1315 785 Gene3D Phosphorylase Kinase; domain 1 418 516 - -
Lal22g1315 785 SMART serkin_6 441 697 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g1315 Lal-Chr22 15977254 15982943 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g1315 331 710 Trihelix Transcription Factor Family AT1G68690 64.474 1.16e-178 526
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Lal22g1315 PK_Tyr_Ser-Thr 1.5e-46 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g1315 22 15977254 15982943 Lal22g1315 22 15977254 15982943 ECH
Lal18g0568 18 4760367 4772597 Lal22g1315 22 15977254 15982943 LSH
Lal22g1315 22 15977254 15982943 Lal6g1636 6 19045654 19052070 LSH