Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g1283 ATGGGAAGAGGTAGGGTTCAGTTGAAACGGATCGAGAACAAAACAAGTCAACAAGTTACATTTTCAAAACGAAGAACAGGACTTCTCAAAAAAGCACATGAAATCTCTGTCTTATGTGATACTCAAATTGCTTTGATTATGTTCTCTACCAAAGGCAAACTTTTTGAGTATTCTTCTGAACCTAGCGTGGAAAACGTGTTGGAACGATATGAGAGACATGCACATACAATAAATGCTGGAGCTAACAATGAATCACAGGAAAACTGGTCTTTCGATTACTTCAAGCTCACTGCTAAAGCTGAAGTTTTAGAAAGGAACATAAGGAACTTTGCTGGATATGATTTGGATCCTTTGAATTTGAAAGAGCTTCAGAATTTGGAGCATCAACTTGACACTGCTCTAAAGCGCATCAGAACAAGAAAGAACCAAGTTTTGAACCAATCCATCTCAGAGATGCAAAAAAGGACAAGGACATTGCAGGAACAAAACAACATGCTTGCAAAGATGAAGGAGAAAAAGAAGACACTAACTGAAAATTTACAACCAGAAACACTAGGCCAAAGTTCATCACCCTTCAACTTGTCTTCTCAAAATCAAATTCGGCGCGAAAAACAAGTTCATTCTCTAACTCTC 633 0.3791 MGRGRVQLKRIENKTSQQVTFSKRRTGLLKKAHEISVLCDTQIALIMFSTKGKLFEYSSEPSVENVLERYERHAHTINAGANNESQENWSFDYFKLTAKAEVLERNIRNFAGYDLDPLNLKELQNLEHQLDTALKRIRTRKNQVLNQSISEMQKRTRTLQEQNNMLAKMKEKKKTLTENLQPETLGQSSSPFNLSSQNQIRREKQVHSLTL 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g1283 211 SUPERFAMILY SRF-like 2 75 IPR036879 GO:0003677|GO:0046983
Lal22g1283 211 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Lal22g1283 211 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lal22g1283 211 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lal22g1283 211 MobiDBLite consensus disorder prediction 181 211 - -
Lal22g1283 211 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lal22g1283 211 PANTHER TRUNCATED TRANSCRIPTION FACTOR CAULIFLOWER A-LIKE ISOFORM X1 1 210 - -
Lal22g1283 211 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Lal22g1283 211 Pfam K-box region 83 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lal22g1283 211 Coils Coil 120 179 - -
Lal22g1283 211 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lal22g1283 211 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lal22g1283 211 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lal22g1283 211 PANTHER MADS BOX PROTEIN 1 210 - -
Lal22g1283 211 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g1283 Lal-Chr22 15545518 15563101 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lal22g1283 K-box 5.2e-25 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g1283 22 15545518 15563101 Lal7g1340 7 18596258 18608189 ECH
Lal22g1283 22 15545518 15563101 Lal14g1878 14 18242293 18252373 ECH
Lal22g1283 22 15545518 15563101 Lal22g1283 22 15545518 15563101 ECH
Lal6g0768 6 5146059 5151334 Lal22g1283 22 15545518 15563101 ECH
Lal22g0679 22 4804362 4810351 Lal22g1283 22 15545518 15563101 ECH
Lal18g0941 18 12253958 12261644 Lal22g1283 22 15545518 15563101 ECH
Lal22g1283 22 15545518 15563101 Lal6g0768 6 5146059 5151334 LSH