Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g1074 ATGCAACCTGCAAAGCAAATGTATTCACTAGCAAGGCCGAGACTAACATGGACTACTACCCTTCAACGCCTTTCACCTTTTCTTCTTTACCATTCAAACTCTCTCCAACTATCTTACATGCCAATTTCTCAAAACTTCTACGACGCTTTCAAGCATTGTTCCTCTCTCAAATCCAAACCCATCGCTCAAAAACTCCACGCCCAACTCATTCTCTCTGGTTTGGATTCCTCTCTTTTCTTGCACAACAATCTACTCCTCATGTACTCCAAATGCGCCTTATTACCCGAAGCTCACCGCCTTTTCCGTGAATCAAATAATCGCAACATCATCACTTGGAACACAATTATTCATGCCTTAGTTGATTCCGGCCAAATCGATCAAGCGCGACTCCTGTTCGACGAAATGCCTGTTAGGGACTCTGTTTCTTGGACCACTATGATATCTGGCTATTGTCGAAATGGGTACCCTGAGTATAGCATTGAAACTTTTGCTTCAATGCTGAGGGATTGTAGTGATGGAAACTATGATGTTTATTCGTTTACTAGTGTAATGAAAGCTTGTGGATGCCTTGGTTATACTGATTTGGCTCTTCAACTACATGGACATGTTATTAAGAAATTGGATTTAGGAAGCGAAAGTTGCATTCAGAATGCTGTTGTTGATATGTATGTTAAGTGTGGTGTGGTTAGTTTGGCAGAGAGTGTTTTTTTCAGCATTGAGAAGCCTAGTTTGTTTTGTTGGAACAGTATGATTTATGGTTATTCTAAATTCTATGGAGCTCGAAAAGCTCTCCATTTATTTGCCAGGATGCCTGAACGTGATGATGTTTCTTGGAACACGCTGATTTCAGTTTTCTCTCAACAAGACCTTGGGGTCCAGTGTCTTGGTATGTTTGTAGATATGTGGAATCAGGGTTTTAGGCCGAATTTCATGACCTATGGTAGTGTACTTAGTGCATGTGCCAGTATTTCTGATCTGGAGTGGGGTAAACATTTGCATGCCCGAATTCTTCGCATGGAACATAGTGTAGATGCTTATTTGGGAAGTGGTCTCGTGGATATGTATGCTAAGTGTGGATGCTTGGGACTTGCGAGGCATGTGTTTGATGGTTTAGGGGAACGTAATGAAGTTTCATGGACTTGTTTGATCACCGGGGTGGCACAGTGTGGACTTGAAGAAGAGGCTCTGGCACTGTTAAACCAAATGAGACAGGATTCTGTAGTTTTGGATGATTTTACTCTTGCCACGGTTCTTGGGGTTTGTTCAGGCCAAAATTATGCTACAGTTGGGGAACTACTTCATGGATATGCAATCAAAAGTGGGATGGATTCCTCTGTTCCTGTAGGGAATGCTATCATCACAATGTATGCAAAGTGTGGAAATACTGACAAAGCTTGTCTTGCTTTTAGAAGAATGCCACTTAGAGATACTATATCATGGACAGCAATGATCACTGCATTTTCTCAAAATGAGGACATTCAAAGAGCCCGAGAATATTTTGATACAATGCCTGAGCGTAATTTCATCACTTGGAACTCAATGTTAAGCACATATGTTCAACATGGCTTCTCAGAAGATGGACTGAAGTTGTATGTACTGATGAGAAGAGAGGGAGTTGAACCAGATTGGATTACTTTTGCAACTTCTATAAGGGCCTGTGCTGATTTAGCTGTTATAAAACTTGGGATACAAGTTGTATCCCATGCTATAAAGTATGGCCTTAGTTCGGATGTTTCAGTTTCAAATAGTATTGTTACCATGTATTCAAGATGTGGACAAATCAAAGAAGCACAAAAAGTTTTTGACTCGATATATGTGAAAAACCTAATTTCCTGGAATGCTATGATGGCAGCATATGCTCAGAATGGTTTAGGTAAGGAATTGATTGAGACATTTGAGGACATGTTGAAGGCAGAGTGCAAGCCGGATCATATAAGCTATATTTCTGTTTTATCTGGGTGCAGTCATATGGGGCTTGTAGTAGAAGGCAAACGTTACTTTGATTCTATGAGTAAAGTTTTTGGAATTTCTCCAACACGTGAGCATTTTGCTTGTATGGTAGATATGCTTGGACGAGCAGGGTTACTAGATGAGGCAAAGAATTTGATAGATGGAATGCCTTTTAAACCAAATGCCACTATTTGGGGGGCTCTACTAGGAGGTTGCCGAATCCATCATGACTCTAGGCTAGCAGAAACTGCAGTAAAGAACTTGATGGAATTAAACATTGAAGATTCTGGAGGTTATGTCCTTCTAGCAAATATATATGCTGAGTCTGGAGAGTTACAAGGTGTTGCCAATATGAGAAAGCTGATAAAAGATAAAGGAATTCAAAAGAGTCCAGGTTGTAGCTGGATTGAAGTTGATAACAGGGTACATGTGTTTACTGTAGATGACACCAATCATCCACAGATAAAGGAAATTTATATTAAACTAGAGGAGATGATGAAGAAGATAGAAGATACAGGAAGATATATTAATGTAGCTTCTTCTGCTCATCGTAGTCAAGAATACCATAGTGAAAAACTTGCCTTTGCTTTTGGGTTGCTTAATGTGCCATCTTGGAAGCCTATAAGTGTAATGAAGAATCTCCGTGTCTGCCATGATTGTCACTTGGTAATAAAGCTGTTGTCTTTTGTCACCTCTAGGGAACTTATCATGCGAGATGCATATCGGTTCCATCATTTCAAGGATGGGTTTTGCTCCTGTGGAGACTATTGGTAA 2724 0.402 MQPAKQMYSLARPRLTWTTTLQRLSPFLLYHSNSLQLSYMPISQNFYDAFKHCSSLKSKPIAQKLHAQLILSGLDSSLFLHNNLLLMYSKCALLPEAHRLFRESNNRNIITWNTIIHALVDSGQIDQARLLFDEMPVRDSVSWTTMISGYCRNGYPEYSIETFASMLRDCSDGNYDVYSFTSVMKACGCLGYTDLALQLHGHVIKKLDLGSESCIQNAVVDMYVKCGVVSLAESVFFSIEKPSLFCWNSMIYGYSKFYGARKALHLFARMPERDDVSWNTLISVFSQQDLGVQCLGMFVDMWNQGFRPNFMTYGSVLSACASISDLEWGKHLHARILRMEHSVDAYLGSGLVDMYAKCGCLGLARHVFDGLGERNEVSWTCLITGVAQCGLEEEALALLNQMRQDSVVLDDFTLATVLGVCSGQNYATVGELLHGYAIKSGMDSSVPVGNAIITMYAKCGNTDKACLAFRRMPLRDTISWTAMITAFSQNEDIQRAREYFDTMPERNFITWNSMLSTYVQHGFSEDGLKLYVLMRREGVEPDWITFATSIRACADLAVIKLGIQVVSHAIKYGLSSDVSVSNSIVTMYSRCGQIKEAQKVFDSIYVKNLISWNAMMAAYAQNGLGKELIETFEDMLKAECKPDHISYISVLSGCSHMGLVVEGKRYFDSMSKVFGISPTREHFACMVDMLGRAGLLDEAKNLIDGMPFKPNATIWGALLGGCRIHHDSRLAETAVKNLMELNIEDSGGYVLLANIYAESGELQGVANMRKLIKDKGIQKSPGCSWIEVDNRVHVFTVDDTNHPQIKEIYIKLEEMMKKIEDTGRYINVASSAHRSQEYHSEKLAFAFGLLNVPSWKPISVMKNLRVCHDCHLVIKLLSFVTSRELIMRDAYRFHHFKDGFCSCGDYW 907
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g1074 907 Pfam E+ motif 792 819 IPR046849 -
Lal22g1074 907 Pfam PPR repeat family 607 655 IPR002885 -
Lal22g1074 907 Pfam PPR repeat family 507 554 IPR002885 -
Lal22g1074 907 Gene3D Tetratricopeptide repeat domain 43 207 IPR011990 GO:0005515
Lal22g1074 907 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 375 409 IPR002885 -
Lal22g1074 907 PANTHER OS07G0578800 PROTEIN-RELATED 130 424 IPR045215 GO:0003723|GO:0009451
Lal22g1074 907 PANTHER OS07G0578800 PROTEIN-RELATED 425 490 IPR045215 GO:0003723|GO:0009451
Lal22g1074 907 PANTHER OS07G0578800 PROTEIN-RELATED 44 126 IPR045215 GO:0003723|GO:0009451
Lal22g1074 907 PANTHER OS07G0578800 PROTEIN-RELATED 490 867 IPR045215 GO:0003723|GO:0009451
Lal22g1074 907 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 476 506 IPR002885 -
Lal22g1074 907 Pfam DYW family of nucleic acid deaminases 838 907 IPR032867 GO:0008270
Lal22g1074 907 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 608 642 IPR002885 -
Lal22g1074 907 Gene3D Tetratricopeptide repeat domain 430 558 IPR011990 GO:0005515
Lal22g1074 907 Pfam PPR repeat 582 603 IPR002885 -
Lal22g1074 907 Pfam PPR repeat 450 473 IPR002885 -
Lal22g1074 907 Pfam PPR repeat 110 137 IPR002885 -
Lal22g1074 907 Pfam PPR repeat 377 405 IPR002885 -
Lal22g1074 907 Pfam PPR repeat 141 169 IPR002885 -
Lal22g1074 907 Pfam PPR repeat 276 306 IPR002885 -
Lal22g1074 907 Pfam PPR repeat 246 273 IPR002885 -
Lal22g1074 907 Pfam PPR repeat 685 706 IPR002885 -
Lal22g1074 907 Pfam PPR repeat 178 201 IPR002885 -
Lal22g1074 907 Gene3D Tetratricopeptide repeat domain 208 328 IPR011990 GO:0005515
Lal22g1074 907 Gene3D Tetratricopeptide repeat domain 660 781 IPR011990 GO:0005515
Lal22g1074 907 Gene3D Tetratricopeptide repeat domain 329 429 IPR011990 GO:0005515
Lal22g1074 907 Gene3D Tetratricopeptide repeat domain 559 659 IPR011990 GO:0005515
Lal22g1074 907 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 274 308 IPR002885 -
Lal22g1074 907 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 108 142 IPR002885 -
Lal22g1074 907 Pfam E motif 725 787 IPR046848 -
Lal22g1074 907 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 44 126 - -
Lal22g1074 907 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 130 424 - -
Lal22g1074 907 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 490 867 - -
Lal22g1074 907 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 425 490 - -
Lal22g1074 907 TIGRFAM PPR: pentatricopeptide repeat domain 110 138 IPR002885 -
Lal22g1074 907 TIGRFAM PPR: pentatricopeptide repeat domain 645 679 IPR002885 -
Lal22g1074 907 TIGRFAM PPR: pentatricopeptide repeat domain 509 543 IPR002885 -
Lal22g1074 907 TIGRFAM PPR: pentatricopeptide repeat domain 377 410 IPR002885 -
Lal22g1074 907 TIGRFAM PPR: pentatricopeptide repeat domain 478 508 IPR002885 -
Lal22g1074 907 TIGRFAM PPR: pentatricopeptide repeat domain 276 309 IPR002885 -
Lal22g1074 907 TIGRFAM PPR: pentatricopeptide repeat domain 610 643 IPR002885 -
Lal22g1074 907 TIGRFAM PPR: pentatricopeptide repeat domain 141 168 IPR002885 -
Lal22g1074 907 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 507 541 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g1074 Lal-Chr22 9621402 9624125 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g1074 22 9621402 9624125 Lal22g1074 22 9621402 9624125 ECH