Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0916 ATGGCCGCGGCCACAACCACCTCCAACACCATGCTCGCCATAATGGAGAAAAAAACAAACTCAATCGATCTCTATCATCCTCTCCGCAACTACATATCCCTCCACTACTCCGAACGCGAAGCCCTAAACCTCGAAGATGATCTCCAAACCTTAAACCGCCACCGCTCCGACATCGACCGCCGCTCCGATCCTTCCCTCCCCTCCCGCCGCGACCTCCTCACGTCCTACTTCAAATCCCTCTGCCTCGTCGAAACTCGCTTCCCAATTTCCCCCGATCCTGGCCACGTCAACACCGTTACCTTCGTCTGGTTCGATGCCTTTAAGCCCAAGCAAAAGGCATCTCTCCAGAATATTCATCTTGAGAAGGCTGCGGTTTTGTTTAACCTTGCCGCGGTTTATAGTCAGATCGGGCTTTCGTTCGATCGCGGCACCGCGGATGGGCGCAGGCAGGCGTTGCATGCTTTTGTTGGTGCTGCTGGGTCGTTTGCTTACTTGAGGGATGGTGCTGCGATGAAGGCGGCGGTTGGGGGTTCTGCGACGGTTGATGTGTCGGTTGAGTGTGCTGGGATGTTGGAGAGGTTAATGCTGGCACAGGCGCAGGAGTGTGTGTTTGAGAATACCATTGCTAAAGGAAGCACTCATGGTGTTTGTGCTAAGATTGCTAGGCAGGTTGGGCTGTACTATGAGGAAGCTTTAGCTGCACTGAATGTTGCACCTCTAAGCCATCATTTTGAGAAATCATGGATAGTTCATGTGCAGTTAAAGGCAGCTTTATTCTATGCAGAAGCTTGTTATAGGCATGGATTAGAGCTACATGAGAAAGAAGAAATAGCAGAGGAGATTTCACGACTGAGGAGTGGAATTAATGCATTAACTGAGGCAAAGAAAAACACAAAGGGTGCTGCAGCACAAATTCTAGATGCAATTGGCAAGTTGGAGTCCAATATGAACCGAAATCTTGAAAGGGCTGTTAAGGAGAATGATAGGGTTTACCTCATGAGAGTTCCTTCCCCCAATTCGTTACCACCTCTTCCAGCATTTTCTATGGTGAAGCCAACGGCAATGAGTGAAGTTTTAGATGCAAGCAAAGAGAAGATGTTTGCCAGTATTGTTCCTGACAGCAGTACAAAGGCCCTCTCCAGGTACACTGAAATGGTAGATGACATTATAAGAACACAGGCTGAAAAGTTGCAAGAAGCTAGTGAGCTAACCCGAGTTAGGCTCAAGGAAATGGAACTGCCTGATTCTATTCTTGCTTTGGAAGGAAATTTTTCTTTGCCAACTCATCTCAAAGAAGATGTGGAGGCTGTGCAGATCAGTGGAAGCCCTTCTGGTTTGGATGCAGAATTGCAGCAACTTAAGGACCTAAGGAGGGTAAATCAAGAATTTTTGGTCCAGACTGAGGAGCTGTTACAGAAGGAAGCAAGAGAAGATTCTCAATTTAGAAGTCAATTTGGTATGAAGTGGACTAGGCCTCAATCAAGCACTTTGACAAAGAACTTGCAGGATAGATTGAACAGATTTGCAGGTAACTTGAAGCAAGCTGGTGAAAGTGATGGTCGTATTGAGCGTTCAGTTAGAGAAAATTCAGCATTTATGTCAATCCTTGATACTCGTCCGATTGAATCTGCACTTCCAACCTTGGCTAGGCCAATAATGTCTTTGGATCAAAATGAAGATGCTGTTTTGGGGTCTCTCAAACTTAGTTTGAGGCAACTAGAAACTCTGGGAGCTCAAAGGGCTGGTCTTGAAGACATGCTTAAAGAGATGAAAAGAAAGGATGATATATTACCCAAGTTGATGACATCAACTGGATCTTATGAGGATCTTTTCAAGAAGGAGATAGCAAAATATGACCATATTTGTGAAGAAATAGCTCAAAATATCGAGGCACAAGAACAGTTGTTGCTGCAGATCCAGGCTCAAAATGATGATTTCTCTGCTATCTTCAATCTTGATGATTACAAAGCTTCACGTGAAAAATCATACAAGCAGATTGAAGCTGCGATAGCAAAGTTCAGAGAAATAAAGGATAACATCAATGAAGGGTTAAAATTTTATGTTACTCTGCAGGATGCTATAACAAATGTAAAGCAGCAGTGCAGTGACTTTGTAATGACAAGAAACATCCAGTGCAGAGAAATGATTGAAGATGTTCAGAGACGAGTTGCTGGTCTCAGTTTCCAAGATAACAGAAACACTGGTGCTTTCAACAGCAACTACTCTTCAGTGGGACAACAAAACCAAAGGCCCAATCCGCAACAAACAGATACTCGTCCACAAACACCATATGAGCAGCCACCGGTGTCCGGTTACGGTCACCCCCCTACACCATATGGTCCTGGTCCTCCACACCAGCCTCCACCGCCGTACCACATTCCACAAACATCAGGTGCTCCATATCCACCTCCTCCTCAGGCCCATCACCCACAGGCAAGTCATGACTACGGCCAACCTGCATATCCAGGATGGCGTGGTCCATACTATAATAATGCACAAGCACAACAACAGCAACAATCTGCATCTGTACCTCGACCTCCTTATACTGTCCAATCTCCATATCCTCCTCACCAAAGTGGCTACTATAATCAGCAATAG 2598 0.4565 MAAATTTSNTMLAIMEKKTNSIDLYHPLRNYISLHYSEREALNLEDDLQTLNRHRSDIDRRSDPSLPSRRDLLTSYFKSLCLVETRFPISPDPGHVNTVTFVWFDAFKPKQKASLQNIHLEKAAVLFNLAAVYSQIGLSFDRGTADGRRQALHAFVGAAGSFAYLRDGAAMKAAVGGSATVDVSVECAGMLERLMLAQAQECVFENTIAKGSTHGVCAKIARQVGLYYEEALAALNVAPLSHHFEKSWIVHVQLKAALFYAEACYRHGLELHEKEEIAEEISRLRSGINALTEAKKNTKGAAAQILDAIGKLESNMNRNLERAVKENDRVYLMRVPSPNSLPPLPAFSMVKPTAMSEVLDASKEKMFASIVPDSSTKALSRYTEMVDDIIRTQAEKLQEASELTRVRLKEMELPDSILALEGNFSLPTHLKEDVEAVQISGSPSGLDAELQQLKDLRRVNQEFLVQTEELLQKEAREDSQFRSQFGMKWTRPQSSTLTKNLQDRLNRFAGNLKQAGESDGRIERSVRENSAFMSILDTRPIESALPTLARPIMSLDQNEDAVLGSLKLSLRQLETLGAQRAGLEDMLKEMKRKDDILPKLMTSTGSYEDLFKKEIAKYDHICEEIAQNIEAQEQLLLQIQAQNDDFSAIFNLDDYKASREKSYKQIEAAIAKFREIKDNINEGLKFYVTLQDAITNVKQQCSDFVMTRNIQCREMIEDVQRRVAGLSFQDNRNTGAFNSNYSSVGQQNQRPNPQQTDTRPQTPYEQPPVSGYGHPPTPYGPGPPHQPPPPYHIPQTSGAPYPPPPQAHHPQASHDYGQPAYPGWRGPYYNNAQAQQQQQSASVPRPPYTVQSPYPPHQSGYYNQQ 865
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0916 865 PANTHER PCD6 INTERACTING PROTEIN-RELATED 1 853 IPR045251 GO:0071985
Lal22g0916 865 Coils Coil 274 294 - -
Lal22g0916 865 MobiDBLite consensus disorder prediction 730 765 - -
Lal22g0916 865 Pfam BRO1-like domain 11 389 IPR004328 -
Lal22g0916 865 Gene3D alix/aip1 in complex with the ypdl late domain 372 650 - -
Lal22g0916 865 ProSiteProfiles BRO1 domain profile. 10 404 IPR004328 -
Lal22g0916 865 Coils Coil 573 593 - -
Lal22g0916 865 CDD BRO1_Alix_like_1 11 366 - -
Lal22g0916 865 Gene3D alix/aip1 like domains 418 699 - -
Lal22g0916 865 PANTHER PROGRAMMED CELL DEATH 6-INTERACTING PROTEIN-LIKE 1 853 - -
Lal22g0916 865 Coils Coil 622 642 - -
Lal22g0916 865 Gene3D alix/aip1 like domains 5 371 IPR038499 -
Lal22g0916 865 MobiDBLite consensus disorder prediction 769 809 - -
Lal22g0916 865 MobiDBLite consensus disorder prediction 829 847 - -
Lal22g0916 865 MobiDBLite consensus disorder prediction 730 865 - -
Lal22g0916 865 SMART BRO1_2 10 394 IPR004328 -
Lal22g0916 865 Pfam ALIX V-shaped domain binding to HIV 425 710 IPR025304 GO:0005515
Lal22g0916 865 CDD V_Alix_like_1 372 708 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0916 Lal-Chr22 7258179 7268246 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g0916 22 7258179 7268246 Lal22g0916 22 7258179 7268246 ECH