Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0743 ATGCATGAGATTAGGAAGGACCAGAAAATAAGGCTTTTTGGTAGAATTATTTCTCTGCCACGCAACAACATCAATGATTCTTCTTCTGAACATGCTCCTTCTCTTCTACCTCAAGATCATAGTCCTCCTTCATCTTCATCTTCTCCACGTGAAGCAGAACATGAAGCAGAAACTTATAAGGAATCATCAACTAAAGAACTTGCCACAGATCAAGATGATGAAGCCACACTTCAAACCAAAGAGGATTTAAAATCTCCTACATCTTCAGGCATTTATGAGAACCCGAAGACTCCCTCTGCAGAAAGAGAGACTTCGTTAGTGAAATCCTCTAAAAATGGAGAACAAACCGAGACAAGTGTGTCGCAAGACAAAACTCTAAAGAAGCCAGAGAAGATACTTCCATGCCCGCGATGCAACAGCATGGACACTAAGTTTTGTTACTACAACAATTACAATGTCAACCAGCCCCGTTACTTCTGCAAGAAGTGTCAGAGATACTGGACTGCTGGAGGAACCATGAGAAATGTTCCCGTAGGCGCAGGTCGCCGCAAGAACAAAAGCTTTCTATCTTCCGCGGCACATTATCACCAAATAATAGTTCCCGAGGCCCTTCAAGCAGCTAAACTCGATGGATTACACAATGGTATGTTAGGAAATGGAGCAGCTGTCTTGACCTTTGGATCAGATTCCCCTCATTGTGATTCCATGCCTTCTGTTTTCAGCCTTGCTGAGAAAGCACAAAATGGTGTAGTCCTAAATGGATTTCATGCACCTAAGCAGAATGTTTTTGTTCACTATGATAAAAAAGAAATTAATTGTAATAACAAAGGGGGTGATAACTTAGTTGGAACTTCAGTTTTGGATTCAACTTCATCTGAGAACAAAGGGCATGGTGGCTCACATGAACCAGTGGATAAGAGTCATCAAGTTTTCCCTCAATTTCCATGCTTCCAAGGTTCTTCTTCCCCTTGGCCTTATCCATGGAACCCTGCATGGCCTCCTCCTCCATTTTCCCAACCATGTTATCCAATGTCATTCTATCCTACACCTGCATATTGGAGTGTTAATGTTATGCCACCACCAACTTGGAGTGTACACCCTATCTCTTCTCAATCCCACTCTACCACTAGCTCTAGCCCAAACTCACATGCTTTGGGGAAACACTCAAGGGATGGGAATATCCTCTCTCAAACCAATTCAATGAAAGAAAAGCCTGGCACAGAAAGTAGTAGCAATAACAACAACTCAGAAAGTAGTGTCTTGATTCCCAAGACACTGAGAATTGATGATCCTGGTGAAGCTGCTAAAAGTTCTTTATGGTCAACACTAGGGATCAAGAATGAAGGAGGAGGTGGAGGAGGTCTTTTCAAGGCATTCCCATCATCCAAGGGTAGTGACAAGAATCATGTGGTTGAAGCACCCCAAGTATTGCATGCAAACCCTGCAGCTTTATCAAGGTCTCTTATCTTCCATGAGAGGACCTAG 1485 0.4283 MHEIRKDQKIRLFGRIISLPRNNINDSSSEHAPSLLPQDHSPPSSSSSPREAEHEAETYKESSTKELATDQDDEATLQTKEDLKSPTSSGIYENPKTPSAERETSLVKSSKNGEQTETSVSQDKTLKKPEKILPCPRCNSMDTKFCYYNNYNVNQPRYFCKKCQRYWTAGGTMRNVPVGAGRRKNKSFLSSAAHYHQIIVPEALQAAKLDGLHNGMLGNGAAVLTFGSDSPHCDSMPSVFSLAEKAQNGVVLNGFHAPKQNVFVHYDKKEINCNNKGGDNLVGTSVLDSTSSENKGHGGSHEPVDKSHQVFPQFPCFQGSSSPWPYPWNPAWPPPPFSQPCYPMSFYPTPAYWSVNVMPPPTWSVHPISSQSHSTTSSSPNSHALGKHSRDGNILSQTNSMKEKPGTESSSNNNNSESSVLIPKTLRIDDPGEAAKSSLWSTLGIKNEGGGGGGLFKAFPSSKGSDKNHVVEAPQVLHANPAALSRSLIFHERT 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0743 494 PANTHER CYCLIC DOF FACTOR 2 5 494 IPR045174 GO:0003700|GO:0006355
Lal22g0743 494 MobiDBLite consensus disorder prediction 21 125 - -
Lal22g0743 494 MobiDBLite consensus disorder prediction 81 120 - -
Lal22g0743 494 MobiDBLite consensus disorder prediction 284 307 - -
Lal22g0743 494 Pfam Dof domain, zinc finger 131 187 IPR003851 GO:0003677|GO:0006355
Lal22g0743 494 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN 5 494 - -
Lal22g0743 494 ProSitePatterns Zinc finger Dof-type signature. 135 171 IPR003851 GO:0003677|GO:0006355
Lal22g0743 494 MobiDBLite consensus disorder prediction 366 421 - -
Lal22g0743 494 ProSiteProfiles Zinc finger Dof-type profile. 133 187 IPR003851 GO:0003677|GO:0006355
Lal22g0743 494 MobiDBLite consensus disorder prediction 21 49 - -
Lal22g0743 494 MobiDBLite consensus disorder prediction 50 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0743 Lal-Chr22 5329464 5335579 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g0743 7 492 C2C2-Dof Transcription Factor Family AT5G39660 41.211 2.57e-92 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lal22g0743 zf-Dof 5.3e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g0743 - - gmx:100813315 501.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g0743 22 5329464 5335579 Lal22g0743 22 5329464 5335579 ECH
Lal22g0743 22 5329464 5335579 Lal7g1385 7 18889309 18891934 ECH
Lal22g0743 22 5329464 5335579 Lal17g1035 17 8707313 8710972 ECH
Lal22g0743 22 5329464 5335579 Lal12g1437 12 17569325 17573124 ECH
Lal22g0743 22 5329464 5335579 Lal13g1809 13 17584731 17588165 ECH
Lal22g0743 22 5329464 5335579 Lal24g1371 24 15003274 15007675 ECH