Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0725 ATGACACTGTACATGCCATTGTTCAGGTCATGTTCCACATTAAGGCCACTCACTCAACTCCACGCACATCTTGTCATCACTGGTCTCCACAAAGACCCACTTGCTTCCACCAAACTTCTTGAGTCCTATGCCCAAATGGGTTCTCTCCAATCATCAAGACTCGTTTTTGACACATACCCATCTCCTGATTCATTCATGTTAGGGGTTCTCATCAAGTGTTACCTCTGGAATCACTTGTTTCACCAAGTCATTTCCCTTTATAATCACCATCACACCCAAAATTTCAGCTTTGTGTACCCTTCTGTTCTGAGGGCTGCTTCTGGTCTTGGTGACTTGGTTATGGGCAGAAAAATCCATGGAAGGATAGTTAAGTCTGGCTTCGGCAATGACCCTGTTATTGGAACCTCATTGTTGGGCATGTATGGAGAATCATGGTGTATATATGATGCTAGGAAGATGTTTGATGAAATGCTTGAGAGAGATTTGTTTTCTTGGAGTTCCATTATCTCGTGCTATGTTGAAAATGGGAACCCGCGAGAAGGGATGAAAATGTTCCGTTCAATGGTTTGTGAGGGAATTAGACCTGATTCGGTTATGTTGCTTAGTGTAGCTGCGGCTTGTGCCAAAGTTGGTTGCTTGAGGCTTGCTAAATCGGTCCATGGATATGTGATCAGGAATGGTATGGTTGGTGATGCTAGTTTGAGTAATTCTCTTATTATTATGTACAGCCAGTGTGGTTACTTGTGTATAGCCGAAGGGCTCTTTGAAAGCCTCACTGATCGAAGTACTGCTTGTTGGACTTCTATGATTTCATCATATAATCAAAATGGTTGCTTTCAGGAAGCACTCAATAGTTTTATTCAAATGCAGGTTTCAGAAGTAGAACCCAATGCAGTGACAATGATCAGTGTTCTGTATTCCTGCGCAAGATTAGGACGGTTGAAAGAGGGGAAATCTATTCATTGTTTTATTTTGAGGAAAGCTATGGATGCGGATGATCTTGATCTAGGACCTGCACTAATAGATTTCTATGCGGCATGTTGGAAAATAACCACTTGTCAAAAACTTCTTTATTTAATTGGAAACAGCAATGTTGTATCATGGAATACACTCATATCATTTTATGATCGAGAAGGTTTATATGAGGAGGCCATGGTACTCTTTGCGCTTATGCTGGCAAAGGGGCTAGTCCCGGACTCATTTAGCTTAGCAAGTTCTATTTCAGCTAGTGCAAGTGCTGGTTCAATACAATTTGGACAGCAGATACACAGCCATGTGTTAAAAAGAGGCTTCATGGACGAATTTGTTCAGAACTCCTTGATGGATATGTATTCGAAATGTGGCTTTGTCGATTTGGCATACACGATTTTTGACAAGATTTCACAGAAAAGCACTGTGACATGGAATTGTATGATTTGTGGATTTTCTCAGAATGGGATTTCATTAGAAGCACTCAACCTATTTGATCAGATGTACTTAAATTGTCTGGAGATTAATGAAGTAACTTTATTAAGTGCAATTCAAGCTTGCTCCAATTTGGGTTATCTTGAGAAGGGAAAATGGATTCACCATAAGATCATTGTATCTGGTATACAAAAGGATCTTTATATTGATACCGCTCTGGTTGACATGTATGCCAAGTGTGGACACCTTGAAACAGCGGAACGAGTTTTCAATACCATACCGGAGAAAAGCGTGGTGTCATGGAGTACCATGATTGCTGCTTATGGCATTAATGGTCAGATAAATGCTGCCATTTCACTCTTCACTAAAATGGTAGAGTCGGGTATTAAGCCAAACGAAGTAACGTTCATGAACGTCTTATCTGCCTGCAGGCATGCTGGATTAGTAAAAGAAGGGAAATTATATTTCAATTCAATGAGAGATTATGGCATAGAGCCTAATGCAGAACATTTTGCCTCTATGGTTGACCTTCTAAGCCGCTCTGGCGATATCGATGCAGCATATGAAATAATAAAATCGATGCGCTTGCCTGTAGATGCTAGCATATGGGGAGCTCTGCTTAACGGGTGCCGGATACATGGAAGGATAGACTTGATTAAGAACATCAATCAAGAACTTGGGGAAATAAGTACAGATGATACAGGATACTATACTTTGTTATCTAATATACATGCCGAAGGAGGAAACCAGTACGAGTCTAGGAAAGTGAGATCAAAGATGGAAGGAATGGGTTTAAAGAAGGTTCCCGGGTACAGTTCAATTGAGATTGATAGGAAAATCTACAGATTTGGAGCTGGGGATACTTCTGAATGGCAAATGAAAGAAATTTACATGTTTCTAGAAAATTTTCAAAGTTTGGTACAGGGACAGGATTTAGAATGCTATAATACATTGTATGGTACTAGCATGTTTTTTAAGGATTATAATGTTTACAATTTGCAGAAAGAAACTAGCAATTCCATTTGGAATAAATCAGTTACAGTTTAG 2451 0.3978 MTLYMPLFRSCSTLRPLTQLHAHLVITGLHKDPLASTKLLESYAQMGSLQSSRLVFDTYPSPDSFMLGVLIKCYLWNHLFHQVISLYNHHHTQNFSFVYPSVLRAASGLGDLVMGRKIHGRIVKSGFGNDPVIGTSLLGMYGESWCIYDARKMFDEMLERDLFSWSSIISCYVENGNPREGMKMFRSMVCEGIRPDSVMLLSVAAACAKVGCLRLAKSVHGYVIRNGMVGDASLSNSLIIMYSQCGYLCIAEGLFESLTDRSTACWTSMISSYNQNGCFQEALNSFIQMQVSEVEPNAVTMISVLYSCARLGRLKEGKSIHCFILRKAMDADDLDLGPALIDFYAACWKITTCQKLLYLIGNSNVVSWNTLISFYDREGLYEEAMVLFALMLAKGLVPDSFSLASSISASASAGSIQFGQQIHSHVLKRGFMDEFVQNSLMDMYSKCGFVDLAYTIFDKISQKSTVTWNCMICGFSQNGISLEALNLFDQMYLNCLEINEVTLLSAIQACSNLGYLEKGKWIHHKIIVSGIQKDLYIDTALVDMYAKCGHLETAERVFNTIPEKSVVSWSTMIAAYGINGQINAAISLFTKMVESGIKPNEVTFMNVLSACRHAGLVKEGKLYFNSMRDYGIEPNAEHFASMVDLLSRSGDIDAAYEIIKSMRLPVDASIWGALLNGCRIHGRIDLIKNINQELGEISTDDTGYYTLLSNIHAEGGNQYESRKVRSKMEGMGLKKVPGYSSIEIDRKIYRFGAGDTSEWQMKEIYMFLENFQSLVQGQDLECYNTLYGTSMFFKDYNVYNLQKETSNSIWNKSVTV 816
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0725 816 TIGRFAM PPR: pentatricopeptide repeat domain 466 499 IPR002885 -
Lal22g0725 816 TIGRFAM PPR: pentatricopeptide repeat domain 567 601 IPR002885 -
Lal22g0725 816 TIGRFAM PPR: pentatricopeptide repeat domain 163 197 IPR002885 -
Lal22g0725 816 TIGRFAM PPR: pentatricopeptide repeat domain 602 636 IPR002885 -
Lal22g0725 816 TIGRFAM PPR: pentatricopeptide repeat domain 366 400 IPR002885 -
Lal22g0725 816 TIGRFAM PPR: pentatricopeptide repeat domain 265 298 IPR002885 -
Lal22g0725 816 Pfam E motif 691 743 IPR046848 -
Lal22g0725 816 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 364 398 IPR002885 -
Lal22g0725 816 PANTHER BNAC02G09320D PROTEIN 97 524 - -
Lal22g0725 816 PANTHER BNAC02G09320D PROTEIN 365 779 - -
Lal22g0725 816 PANTHER BNAC02G09320D PROTEIN 7 360 - -
Lal22g0725 816 Gene3D Tetratricopeptide repeat domain 216 333 IPR011990 GO:0005515
Lal22g0725 816 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 565 599 IPR002885 -
Lal22g0725 816 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 365 779 - -
Lal22g0725 816 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 7 360 - -
Lal22g0725 816 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 97 524 - -
Lal22g0725 816 Pfam PPR repeat 163 193 IPR002885 -
Lal22g0725 816 Pfam PPR repeat 438 462 IPR002885 -
Lal22g0725 816 Pfam PPR repeat 640 663 IPR002885 -
Lal22g0725 816 Pfam PPR repeat 135 161 IPR002885 -
Lal22g0725 816 Pfam PPR repeat 265 291 IPR002885 -
Lal22g0725 816 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 464 498 IPR002885 -
Lal22g0725 816 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 262 296 IPR002885 -
Lal22g0725 816 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 600 634 IPR002885 -
Lal22g0725 816 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 161 195 IPR002885 -
Lal22g0725 816 Gene3D Tetratricopeptide repeat domain 539 748 IPR011990 GO:0005515
Lal22g0725 816 Gene3D Tetratricopeptide repeat domain 415 535 IPR011990 GO:0005515
Lal22g0725 816 Gene3D Tetratricopeptide repeat domain 334 414 IPR011990 GO:0005515
Lal22g0725 816 Gene3D Tetratricopeptide repeat domain 79 215 IPR011990 GO:0005515
Lal22g0725 816 Pfam PPR repeat family 364 402 IPR002885 -
Lal22g0725 816 Pfam PPR repeat family 564 611 IPR002885 -
Lal22g0725 816 Pfam PPR repeat family 463 511 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0725 Lal-Chr22 5175947 5178397 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g0725 22 5175947 5178397 Lal22g0725 22 5175947 5178397 ECH