Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0706 ATGGAGGAGAGGAAGTTTGTGTGCAAGTATTGCAGCAAGAGGTTCCCTTGTGGAAAATCATTGGGTGGACACATTAGGACACATATGAATGGACATTCAGTTCAAGCCAATGAAGAGAGAAGCAATGCTGCTATGCTCAAGTTTGATGCTATGAGAAAGAAGAAGAGAGATTCATTAGGGTATGGTGATGGGGATGATGGTGCTGGTGCTGCTGGGAACCCCACTTATGGCCTGAGAGAGAATCCCAAGAAAACAATGAGGTTTGTGCATTCCAATTCCACTAATAATGTGCAGCATCAATTTGACAAGTTCTGCCAAGAATGTGGGAAAGGTTTCTCATCATTGAAAGCTCTTTGTGGTCACATGGCATGTCACTCAGAAAAAGAGAAGCATAAATTGGTTTTGGATAGTGAATCTGATACTGAGACCAATTCTGTTCCAAGAAGGTCCAAGAGAATGAGGTTCAAGAACAATAGCAGCAGCAGCAACAACAACAACAATCACCTTTCTTCTTCTTTGGCAAATGGATCTTCTCTTGTATCAGAGGTTGAGCAGGAACAAGAAGAAGTTGCTAGGTGTTTAATGATGTTGTCCAAAGACACTACCTACAATAGTGGTCGTTTTGCTTTGTTTGCTGAGTCTTCTGACAACAATTCTGTTGTTCTAGAGGCAAAATCACCTTCTCTTAATACAAAGTTCACTATAAAAAATGGTAAGAATTCTGTGTCCAATGCTTATGAATTTGTGGAGAAGAAGCTGCAAAAGGGTACAAAGTTAAAGTCTGCTGAGATTGGTTCTGATTATGATAACTCAGATTCAGGTTACTTAAGGTATGGTCCTAAAAAGATAGACTCAGCTGATTCAAATGATGGGTTTTTTAGGACTGAAGTTAAGTCTTCTAAAGTGGTAGACATGTCTGGGTTTGAGGACTATGATGATGAAATTAACAAGGTATTTAGCAGAGGAAGAAGCACGAACACCGAATTTAAGAAATTAGTGTATGAGGATTTGGAAAATGGAGCTACAAGAAGGTCTGATTCAAAGAAGAGACTTATGTATGATTCTCTTGGTTCAAAGAAGGCTACAAATGGTTTTAACAATGATGAAATATATAAGCATGGTAGAAAAGGGTGGAAGTATGAGTCCTTGAACACTGAAATACAAAATGTTTATGAAGATGATTCAGCATATGAGAGTGATGAAAACAGCTCTGACAGTGATTCTTATACTGCTGCAAAGTCTCACAACATTAAGGCCCTCAATGGGAAGAAATCCAGCAAGGGGAAGCAGATGAAGAAGAAGAAGCTGAAGTCAAAGAAAATCAAGGAGCATGAGTGTCCAATCTGCAACAGAATTTTCAGGTCAGGCCAAGCCTTGGGAGGTCACAAAAGGTCCCATTTTGTTGGAGGTTCTGAAGAAAACACACTTGTGATTAGGCCAGCTGGTCCTCCTCCAACTCCTTCCTTAATTGATCTCAATCTACCTGCTCCAATTGATGAATAG 1503 0.3979 MEERKFVCKYCSKRFPCGKSLGGHIRTHMNGHSVQANEERSNAAMLKFDAMRKKKRDSLGYGDGDDGAGAAGNPTYGLRENPKKTMRFVHSNSTNNVQHQFDKFCQECGKGFSSLKALCGHMACHSEKEKHKLVLDSESDTETNSVPRRSKRMRFKNNSSSSNNNNNHLSSSLANGSSLVSEVEQEQEEVARCLMMLSKDTTYNSGRFALFAESSDNNSVVLEAKSPSLNTKFTIKNGKNSVSNAYEFVEKKLQKGTKLKSAEIGSDYDNSDSGYLRYGPKKIDSADSNDGFFRTEVKSSKVVDMSGFEDYDDEINKVFSRGRSTNTEFKKLVYEDLENGATRRSDSKKRLMYDSLGSKKATNGFNNDEIYKHGRKGWKYESLNTEIQNVYEDDSAYESDENSSDSDSYTAAKSHNIKALNGKKSSKGKQMKKKKLKSKKIKEHECPICNRIFRSGQALGGHKRSHFVGGSEENTLVIRPAGPPPTPSLIDLNLPAPIDE 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0706 500 SUPERFAMILY beta-beta-alpha zinc fingers 2 31 IPR036236 -
Lal22g0706 500 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 500 - -
Lal22g0706 500 ProSiteProfiles Zinc finger C2H2 type domain profile. 444 466 IPR013087 -
Lal22g0706 500 ProSiteProfiles Zinc finger C2H2 type domain profile. 103 130 IPR013087 -
Lal22g0706 500 Pfam C2H2-type zinc finger 444 466 - -
Lal22g0706 500 Pfam C2H2-type zinc finger 6 29 - -
Lal22g0706 500 Pfam C2H2-type zinc finger 105 127 - -
Lal22g0706 500 MobiDBLite consensus disorder prediction 394 440 - -
Lal22g0706 500 MobiDBLite consensus disorder prediction 420 440 - -
Lal22g0706 500 ProSitePatterns Zinc finger C2H2 type domain signature. 105 125 IPR013087 -
Lal22g0706 500 ProSiteProfiles Zinc finger C2H2 type domain profile. 6 33 IPR013087 -
Lal22g0706 500 SUPERFAMILY beta-beta-alpha zinc fingers 104 466 IPR036236 -
Lal22g0706 500 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 500 - -
Lal22g0706 500 MobiDBLite consensus disorder prediction 475 500 - -
Lal22g0706 500 MobiDBLite consensus disorder prediction 57 80 - -
Lal22g0706 500 SMART c2h2final6 6 28 IPR013087 -
Lal22g0706 500 SMART c2h2final6 444 466 IPR013087 -
Lal22g0706 500 SMART c2h2final6 103 125 IPR013087 -
Lal22g0706 500 ProSitePatterns Zinc finger C2H2 type domain signature. 8 28 IPR013087 -
Lal22g0706 500 MobiDBLite consensus disorder prediction 402 419 - -
Lal22g0706 500 MobiDBLite consensus disorder prediction 156 181 - -
Lal22g0706 500 MobiDBLite consensus disorder prediction 130 181 - -
Lal22g0706 500 MobiDBLite consensus disorder prediction 130 149 - -
Lal22g0706 500 ProSitePatterns Zinc finger C2H2 type domain signature. 446 466 IPR013087 -
Lal22g0706 500 Gene3D Classic Zinc Finger 1 59 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0706 Lal-Chr22 5098931 5100433 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lal22g0706 zf-C2H2_6 1.4e-06 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g0706 22 5098931 5100433 Lal22g0706 22 5098931 5100433 ECH