Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0680 ATGGGTAGGGGAAAGGTTGAGCTGAAGAGGATTGAGAACAAGATAAATCGTCAAGTAACATTTGCAAAGAGAAGAAATGGGTTGTTCAAGAAGGCTTATGAACTTTCTATTCTCTGTGATGCTGAGATTGCTCTCATTATCTTCTCCAACCGTGGGAAGCTCTATGAGTTCTGTAGCAGCTCTAGCATGGAGAAGACACTTGAACGGTATCATAGATGCAGTTACGAATCCTTGGAAGAACACCACCAACCTGCAATGGAAACACAGAAGAGATATCAAGAGTATCTCAAGCTGAAATCAAAAGTTGAGGCATTACAGCGCACGCAGAGAAGTTTCCTTGGGGAAGAATTAGAGCACTTGGATATTAAGGAGCTTGAGCAACTTGAACATCAGCTGGACTCTTCATTAAAGCAAATCAGGTCTAATAAGACACAACATATGATTGATCAAGTCGCTGAACTGAAAACTAAGTTGGAGGAAATTAATATATCCCTTCAACCAACATGGGAGCAAAATGCTAATGCTCCCTACAACCGCCACCCTCCCACCGCAGAGGGATACTATGAGACACCACATTGCATTAGTAGCCTCGTAATCGGTTCTGCAGCAACTAATGAAGCAAGAGGAGCTCCAGGATCCTCAGCTCATAATACCAGTACTGAATTCATGCATGGATGGATGACCTGA 687 0.4294 MGRGKVELKRIENKINRQVTFAKRRNGLFKKAYELSILCDAEIALIIFSNRGKLYEFCSSSSMEKTLERYHRCSYESLEEHHQPAMETQKRYQEYLKLKSKVEALQRTQRSFLGEELEHLDIKELEQLEHQLDSSLKQIRSNKTQHMIDQVAELKTKLEEINISLQPTWEQNANAPYNRHPPTAEGYYETPHCISSLVIGSAATNEARGAPGSSAHNTSTEFMHGWMT 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0680 228 ProSiteProfiles K-box domain profile. 88 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lal22g0680 228 Pfam K-box region 87 160 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lal22g0680 228 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lal22g0680 228 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lal22g0680 228 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lal22g0680 228 SUPERFAMILY SRF-like 2 88 IPR036879 GO:0003677|GO:0046983
Lal22g0680 228 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Lal22g0680 228 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lal22g0680 228 MobiDBLite consensus disorder prediction 207 228 - -
Lal22g0680 228 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lal22g0680 228 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 1 205 - -
Lal22g0680 228 Gene3D - 13 109 IPR036879 GO:0003677|GO:0046983
Lal22g0680 228 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lal22g0680 228 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lal22g0680 228 PANTHER MADS BOX PROTEIN 1 205 - -
Lal22g0680 228 Coils Coil 122 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0680 Lal-Chr22 4814002 4826086 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g0680 1 202 MADS-box Gene Family AT5G15800 56.054 3.22e-79 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lal22g0680 K-box 8.9e-23 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g0680 22 4814002 4826086 Lal22g0680 22 4814002 4826086 ECH
Lal22g0680 22 4814002 4826086 Lal6g1586 6 18365659 18371655 ECH
Lal22g0680 22 4814002 4826086 Lal6g0771 6 5170659 5171494 LSH