Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0679 ATGGGAAGGGGTAGGGTACAACTGAAGAGGATAGAAAACAAGATCAACAGACAAGTAACTTTCTCCAAAAGGAGAGCTGGGTTACTCAAGAAAGCACATGAGATCTCAGTGCTCTGTGATGCTGAGGTTGCTTTGATTGTCTTCTCCAACAAAGGAAAGCTCTTTGAATATGCCACTGATTCATGCATGGAGAAGATACTGGAACGCCATGAAAGGTATGCCTATGCGGAGAGACAGCTGGTGGCAAATGATTCTGAGACACAGGGAAACTGGACCATTGAATATACTAGACTCAAGGCAAAGATTGACCTTTTGCAGAGAAACCACAGACACTATATGGGAGAAGATTTGGGTTCAATGAGCCTCAAAGAGCTTCAAAGTCTGGAACAGCAGCTAGATACTGCTCTTAAAACCATTCGTACACGCAGAAACCAACTCATGTATGAGTCTATTTCTGAGCTTCAGAAAAAGGAGAAAGTGATCCAAGAGCAGAATCACATGCTCGCAAAGAAGATCAAGGAGAAAGAAAAGGCTAACGCTGCTCATCAGACTGCACCATGGGATCAATCAAACTATAGAGTTGATACATCTTTCTTGATACAACAACCCCTTCCCACTTTGAACATGGGTGTTAATCACCGTCAGGAAGCACCAGAAGTAGGGAGGAACGAGCTTGACCTGAGCCTGGAACCATTCTATTCTTGCCACCTTGGCTGCTTTTGA 723 0.4398 MGRGRVQLKRIENKINRQVTFSKRRAGLLKKAHEISVLCDAEVALIVFSNKGKLFEYATDSCMEKILERHERYAYAERQLVANDSETQGNWTIEYTRLKAKIDLLQRNHRHYMGEDLGSMSLKELQSLEQQLDTALKTIRTRRNQLMYESISELQKKEKVIQEQNHMLAKKIKEKEKANAAHQTAPWDQSNYRVDTSFLIQQPLPTLNMGVNHRQEAPEVGRNELDLSLEPFYSCHLGCF 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0679 240 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lal22g0679 240 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Lal22g0679 240 Pfam K-box region 84 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lal22g0679 240 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lal22g0679 240 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lal22g0679 240 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lal22g0679 240 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lal22g0679 240 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lal22g0679 240 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Lal22g0679 240 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lal22g0679 240 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lal22g0679 240 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 222 - -
Lal22g0679 240 Coils Coil 161 181 - -
Lal22g0679 240 PANTHER TRUNCATED TRANSCRIPTION FACTOR CAULIFLOWER A 1 222 - -
Lal22g0679 240 SUPERFAMILY SRF-like 2 92 IPR036879 GO:0003677|GO:0046983
Lal22g0679 240 Coils Coil 125 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0679 Lal-Chr22 4804362 4810351 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lal22g0679 K-box 2.4e-30 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g0679 22 4804362 4810351 Lal22g0679 22 4804362 4810351 ECH
Lal22g0679 22 4804362 4810351 Lal22g1283 22 15545518 15563101 ECH
Lal22g0679 22 4804362 4810351 Lal6g0768 6 5146059 5151334 LSH
Lal22g0679 22 4804362 4810351 Lal18g0941 18 12253958 12261644 LSH