Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0633 ATGGATGGAGGTAGTTGCAATGAAGAAAGCACCACAACTGACTCACTTTCTATAACCCTATCTCCCACAACAACCCTATTAACATTCACTGCCTCGTCAAAGAAGATGTCACCACTTCCTCTATCCAATACCCTTTGTCGTGCTGGCAGTGGTGCCAGCATGATAATTGACTCAGATAGTGGAAGTGGTGTAGAAGCAGAGTCAAGGAAACTCCCGTCTTCTAAGTATAAAGGTGTGGTTCCCCAGCCAAACAGGCGTTGGGGTGCTCAGATCTATGAGAAGCACCAACGTGTTTGGTTGGGCACCTTTAATACAGAAGAGGGTGCTGCCAAAGCCTATGACACGGCGGCTCAGCGGTTCCGTGGCAAGGACGCCATAACAAACTTCAAGCCACCTAGCAATTCCGTCGTCGTAGACGGCGGCAACGACGACATAGAGGCCGAGTTCCTCAACTCACATTCGAAATCCGAGATCGTCGACATGCTGAGGAAGCACACCTACAATGATGAGCTGGAACAGAGCAAGCGCAACCGCGGCTTTATCGACCGTTCTCTCAGCCGCAGCACCGCCGCAAACAACGGTGTCGACGGTTATTTTTCCGGCGGGACCGGTAACAAGGCGCGTGAGCAGCTGTTCGAAAAAGCGGTTACGCCTAGCGACGTAGGGAAGCTGAACCGGTTAGTTATACCGAAGCAGCACGCAGAGAAGCACTTTCCGTTACAAAACGGCGTTAACGGAGTCGTAGCAGGGAAGGGTGTGCTATTGAACTTTGAGGATGTTGGAGGGAAAGTGTGGCGGTTCCGTTACTCATATTGGAATAGTAGTCAAAGTTATGTTCTCACTAAAGGGTGGAGCCGGTTCGTGAAGGATAAGAACCTAAAAGCCGGTGATACGGTTTTTTTCCATAAGTCGACCGGACCGGATAAGCAGATGTATATTGACTGGAAAGCAAGGAATATTGATAACGAGGTTCGGACGGTTGGACCGATTGTCGAGCCGATTCAGATGTTTCGGCTCTTTGGGGTAAACATTTTAAAAGTACCTGGGTCTGATGCAAATGGTAATATTAATAGTGCAAGTAGCATTGGTGGGTGCTCCAATGGGAAGAGGAAAGAGATGGAAATGTTTACATTAGAGTGTAGCAAGAAGCCTAAGATCATTGCAACTTTGTAA 1173 0.4859 MDGGSCNEESTTTDSLSITLSPTTTLLTFTASSKKMSPLPLSNTLCRAGSGASMIIDSDSGSGVEAESRKLPSSKYKGVVPQPNRRWGAQIYEKHQRVWLGTFNTEEGAAKAYDTAAQRFRGKDAITNFKPPSNSVVVDGGNDDIEAEFLNSHSKSEIVDMLRKHTYNDELEQSKRNRGFIDRSLSRSTAANNGVDGYFSGGTGNKAREQLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQNGVNGVVAGKGVLLNFEDVGGKVWRFRYSYWNSSQSYVLTKGWSRFVKDKNLKAGDTVFFHKSTGPDKQMYIDWKARNIDNEVRTVGPIVEPIQMFRLFGVNILKVPGSDANGNINSASSIGGCSNGKRKEMEMFTLECSKKPKIIATL 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0633 390 SMART rav1_2 75 136 IPR001471 GO:0003700|GO:0006355
Lal22g0633 390 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 4 390 IPR044800 GO:0003700
Lal22g0633 390 Pfam AP2 domain 74 122 IPR001471 GO:0003700|GO:0006355
Lal22g0633 390 PANTHER PROTEIN RAV1, PUTATIVE-RELATED 4 390 - -
Lal22g0633 390 SUPERFAMILY DNA-binding pseudobarrel domain 210 313 IPR015300 -
Lal22g0633 390 CDD B3_DNA 211 304 IPR003340 GO:0003677
Lal22g0633 390 Gene3D AP2/ERF domain 74 131 IPR036955 GO:0003700|GO:0006355
Lal22g0633 390 SMART B3_2 212 319 IPR003340 GO:0003677
Lal22g0633 390 SUPERFAMILY DNA-binding domain 74 130 IPR016177 GO:0003677
Lal22g0633 390 Gene3D - 200 327 IPR015300 -
Lal22g0633 390 CDD AP2 74 129 IPR001471 GO:0003700|GO:0006355
Lal22g0633 390 ProSiteProfiles B3 DNA-binding domain profile. 212 319 IPR003340 GO:0003677
Lal22g0633 390 ProSiteProfiles AP2/ERF domain profile. 75 130 IPR001471 GO:0003700|GO:0006355
Lal22g0633 390 Pfam B3 DNA binding domain 212 315 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0633 Lal-Chr22 4459754 4460926 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g0633 1 387 RAV Transcription Factor Family AT1G13260 57.179 4.61e-137 393
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-RAV Lal22g0633 B3 2.1e-28 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g0633 22 4459754 4460926 Lal22g0633 22 4459754 4460926 ECH